View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-20 (Length: 133)
Name: Solexa-NF5855-20
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-58
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 13852923 - 13852796
Alignment:
| Q |
7 |
attgggttcatagttttgaagagaggtgagtgtgataaccagctccagcacatggtgcatatg-tatttgctgacctcatattcaagwagatttttgaca |
105 |
Q |
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| T |
13852923 |
attgggttcatagttttgaagagaggtgagtgtgataaccagctccagcacatggtgcatatgttgtttgctgacctcatattcaagaagatttttgaca |
13852824 |
T |
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| Q |
106 |
tcatatttatacaagaccaatttaacaa |
133 |
Q |
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| T |
13852823 |
tcatatttatacaagaccaatttaacaa |
13852796 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 13845677 - 13845623
Alignment:
| Q |
74 |
tgctgacctcatattcaagwagatttttgacatcatatttatacaagaccaattt |
128 |
Q |
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| T |
13845677 |
tgctgacctcatattcaagaagatttttgacatcatattgatcaaagaccaattt |
13845623 |
T |
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