View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5855-22 (Length: 187)

Name: Solexa-NF5855-22
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5855-22
Solexa-NF5855-22
[»] chr8 (9 HSPs)
chr8 (5-186)||(1969362-1969543)
chr8 (8-145)||(2007519-2007656)
chr8 (5-136)||(2004148-2004279)
chr8 (9-136)||(2011143-2011270)
chr8 (9-137)||(1965424-1965552)
chr8 (29-136)||(2437180-2437287)
chr8 (5-136)||(2017931-2018062)
chr8 (5-117)||(1963750-1963862)
chr8 (50-87)||(23269096-23269133)
[»] chr1 (2 HSPs)
chr1 (9-137)||(5902930-5903058)
chr1 (9-137)||(5906414-5906542)
[»] chr4 (1 HSPs)
chr4 (50-121)||(5890603-5890674)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 1969362 - 1969543
Alignment:
Q  5 gaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969362 gaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatag 1969461  T
Q  105 cactcaagtggagaaatttggtgtaggaaaacttataaatcattagtgtgtcagtttctgcgttgttgctcttcctatttag 186  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  1969462 cactcaagtggagaaatttggtgtaggaaaacttaaaaatccttagtgtgttagtttctgcgttgttgctcttcctatttag 1969543  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 2007656 - 2007519
Alignment:
Q  8 ggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcac 107  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2007656 ggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatggttcttctacaaaaactatttctcaaatagcac 2007557  T
Q  108 tcaagtggagaaatttggtgtaggaaaacttataaatc 145  Q
    | ||||||||||||||||||||| |||||||| |||||    
T  2007556 ttaagtggagaaatttggtgtagaaaaacttaaaaatc 2007519  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 2004279 - 2004148
Alignment:
Q  5 gaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatag 104  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||||||| |||||||||||| |||    
T  2004279 gaaggtgagaaattgcgcaataacatgaaggaattaaaagaatctgcttcgaatgctgtcaaagaagatggttcttctacaaacactatttctcaattag 2004180  T
Q  105 cactcaagtggagaaatttggtgtaggaaaac 136  Q
    ||||||||||||||||||| ||||||||||||    
T  2004179 cactcaagtggagaaatttagtgtaggaaaac 2004148  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 2011270 - 2011143
Alignment:
Q  9 gtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcact 108  Q
    ||||||| |||| |||||| ||||||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||| |||||||||||| || ||||    
T  2011270 gtgagaaattgcacaataatatgaaggaattaaaagaagttgcttctaatgcactcaaagaagatggatcttctacaaagactatttctcaattaacact 2011171  T
Q  109 caagtggagaaatttggtgtaggaaaac 136  Q
    ||||||||||||||||||| || |||||    
T  2011170 caagtggagaaatttggtgcagaaaaac 2011143  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 1965424 - 1965552
Alignment:
Q  9 gtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcact 108  Q
    ||||||| |||| |||||| |||||||| ||||||| || |||||| |||||| ||||||||||||| ||||||||||| ||||| |||||| || ||||    
T  1965424 gtgagaaattgcacaataatatgaaggagttaaaaggagttgcttccaatgcactcaaagaagatggatcttctacaaagactatatctcaattaacact 1965523  T
Q  109 caagtggagaaatttggtgtaggaaaact 137  Q
    ||||||||||||||||||| |||||||||    
T  1965524 caagtggagaaatttggtgcaggaaaact 1965552  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 2437180 - 2437287
Alignment:
Q  29 atgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgt 128  Q
    ||||| ||| |||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||  ||||||     
T  2437180 atgaaagaactaaaagaagctgcttctaatgcactcaaagaagatggttcttcgacaaagactatttctcaattaacactcaagtggagaagcttggtgc 2437279  T
Q  129 aggaaaac 136  Q
    ||||||||    
T  2437280 aggaaaac 2437287  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 2018062 - 2017931
Alignment:
Q  5 gaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatag 104  Q
    ||||||| |||  ||||||| || |||||||||||||||||| |||||   | ||||   ||||| ||||| |||| |||||| ||  |||||||| |||    
T  2018062 gaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatcttttacaaagacactttctcaattag 2017963  T
Q  105 cactcaagtggagaaatttggtgtaggaaaac 136  Q
    |||||||||||||||||||||| ||| |||||    
T  2017962 cactcaagtggagaaatttggtatagaaaaac 2017931  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 1963750 - 1963862
Alignment:
Q  5 gaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatag 104  Q
    ||||||| |||  |||| ||||| ||||||||||| ||||||||||||   | || |   ||||||||||||||| ||||||| ||| |||||||| |||    
T  1963750 gaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaagaagatggttctactacaaagactctttctcaattag 1963849  T
Q  105 cactcaagtggag 117  Q
    |||||||||||||    
T  1963850 cactcaagtggag 1963862  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 23269096 - 23269133
Alignment:
Q  50 gcttcaaatgcaatcaaagaagatggttcttctacaaa 87  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  23269096 gcttctaatgcactcaaagaagatggttcttctacaaa 23269133  T

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Target: chr1 (Bit Score: 69; Significance: 3e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 5902930 - 5903058
Alignment:
Q  9 gtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcact 108  Q
    ||||||| ||||||||||| ||||||||||||||||||||| || | |||||  |||||||||| || ||||||| ||| || ||||||||| |||||||    
T  5902930 gtgagaatttgcgcaataatatgaaggaattaaaagaagcttctactaatgcgctcaaagaagacgggtcttctagaaagaccatttctcaattagcact 5903029  T
Q  109 caagtggagaaatttggtgtaggaaaact 137  Q
    ||||||||||||||||||| | |||||||    
T  5903030 caagtggagaaatttggtgcatgaaaact 5903058  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 5906414 - 5906542
Alignment:
Q  9 gtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcact 108  Q
    ||||||| ||||||||||| ||||||||||| |||||||| ||| | |||||| |  |||||||||| ||||||| ||| ||| |||||||| ||||||     
T  5906414 gtgagaaattgcgcaataatatgaaggaattgaaagaagcagctactaatgcacttcaagaagatgggtcttctagaaagactgtttctcaattagcaca 5906513  T
Q  109 caagtggagaaatttggtgtaggaaaact 137  Q
    |||||||| |||||||||| | |||||||    
T  5906514 caagtggaaaaatttggtgcatgaaaact 5906542  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 5890674 - 5890603
Alignment:
Q  50 gcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaat 121  Q
    ||||| |||||| ||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||    
T  5890674 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 5890603  T

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