View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5855-23 (Length: 129)

Name: Solexa-NF5855-23
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5855-23
Solexa-NF5855-23
[»] chr4 (14 HSPs)
chr4 (8-129)||(29150122-29150243)
chr4 (20-69)||(38853881-38853930)
chr4 (16-69)||(2574822-2574875)
chr4 (20-69)||(3381934-3381983)
chr4 (20-69)||(8658017-8658066)
chr4 (20-69)||(19737503-19737552)
chr4 (20-69)||(20548898-20548947)
chr4 (20-69)||(39744920-39744969)
chr4 (16-69)||(39991415-39991468)
chr4 (20-69)||(50188312-50188361)
chr4 (16-69)||(55081186-55081239)
chr4 (20-69)||(55792727-55792776)
chr4 (26-69)||(8093773-8093816)
chr4 (26-69)||(8102578-8102621)
[»] chr5 (16 HSPs)
chr5 (20-71)||(26186138-26186189)
chr5 (26-69)||(23349572-23349615)
chr5 (20-69)||(24956330-24956379)
chr5 (20-69)||(24964790-24964839)
chr5 (20-69)||(25041759-25041808)
chr5 (20-69)||(25526707-25526756)
chr5 (20-69)||(25533389-25533438)
chr5 (20-69)||(28844456-28844505)
chr5 (20-69)||(28853066-28853115)
chr5 (20-69)||(30249841-30249890)
chr5 (20-69)||(36448771-36448820)
chr5 (20-69)||(36455155-36455204)
chr5 (20-69)||(37048884-37048933)
chr5 (26-69)||(1727657-1727700)
chr5 (26-69)||(43597544-43597587)
chr5 (26-69)||(43630338-43630381)
[»] chr1 (14 HSPs)
chr1 (20-71)||(19367986-19368037)
chr1 (15-69)||(9352794-9352848)
chr1 (25-69)||(31064513-31064557)
chr1 (26-69)||(3432393-3432436)
chr1 (26-69)||(51968458-51968501)
chr1 (27-69)||(8770162-8770204)
chr1 (15-69)||(9327948-9328002)
chr1 (20-69)||(2416196-2416245)
chr1 (20-69)||(15473359-15473408)
chr1 (26-71)||(20429887-20429932)
chr1 (20-69)||(47108896-47108945)
chr1 (25-69)||(44832045-44832089)
chr1 (26-69)||(31540497-31540540)
chr1 (26-69)||(31549066-31549109)
[»] chr8 (11 HSPs)
chr8 (16-69)||(19950376-19950429)
chr8 (16-69)||(19954830-19954883)
chr8 (20-71)||(32000288-32000339)
chr8 (20-71)||(32007257-32007308)
chr8 (16-69)||(4543779-4543832)
chr8 (16-69)||(21640645-21640698)
chr8 (20-69)||(32025144-32025193)
chr8 (20-69)||(39837063-39837112)
chr8 (20-69)||(39845105-39845154)
chr8 (25-69)||(22156479-22156523)
chr8 (26-69)||(30938825-30938868)
[»] chr7 (10 HSPs)
chr7 (20-69)||(6851505-6851554)
chr7 (16-69)||(29477742-29477795)
chr7 (20-69)||(44412806-44412855)
chr7 (23-69)||(28415656-28415702)
chr7 (25-69)||(4831839-4831883)
chr7 (25-69)||(6897895-6897939)
chr7 (26-69)||(12978998-12979041)
chr7 (26-69)||(13832021-13832064)
chr7 (26-69)||(13840051-13840094)
chr7 (26-69)||(18303882-18303925)
[»] chr6 (11 HSPs)
chr6 (20-69)||(20452142-20452191)
chr6 (25-69)||(26896976-26897020)
chr6 (16-66)||(32814555-32814605)
chr6 (20-69)||(19714208-19714257)
chr6 (20-69)||(19899476-19899525)
chr6 (20-69)||(20458959-20459008)
chr6 (20-69)||(22232102-22232151)
chr6 (20-69)||(25506023-25506072)
chr6 (20-68)||(3917086-3917134)
chr6 (26-69)||(30824019-30824062)
chr6 (26-69)||(35091159-35091202)
[»] chr3 (20 HSPs)
chr3 (20-69)||(14880807-14880856)
chr3 (20-69)||(14892622-14892671)
chr3 (20-71)||(68673-68724)
chr3 (20-71)||(74766-74817)
chr3 (19-70)||(14398081-14398132)
chr3 (25-84)||(12558375-12558436)
chr3 (20-69)||(8606680-8606729)
chr3 (20-69)||(9524911-9524960)
chr3 (20-69)||(13105135-13105184)
chr3 (20-69)||(13111292-13111341)
chr3 (20-69)||(14887524-14887573)
chr3 (20-69)||(21638054-21638103)
chr3 (20-69)||(23287623-23287672)
chr3 (20-69)||(48060225-48060274)
chr3 (25-69)||(16983519-16983563)
chr3 (26-69)||(8154137-8154180)
chr3 (20-67)||(16815349-16815396)
chr3 (20-67)||(17934592-17934639)
chr3 (26-69)||(41007101-41007144)
chr3 (26-69)||(41015880-41015923)
[»] scaffold0085 (1 HSPs)
scaffold0085 (20-69)||(18240-18289)
[»] scaffold0043 (1 HSPs)
scaffold0043 (20-69)||(32720-32769)
[»] scaffold0039 (1 HSPs)
scaffold0039 (20-69)||(89363-89412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (20-69)||(33216-33265)
[»] scaffold0027 (1 HSPs)
scaffold0027 (20-69)||(24110-24159)
[»] chr2 (14 HSPs)
chr2 (20-69)||(5870601-5870650)
chr2 (20-69)||(5873743-5873792)
chr2 (20-69)||(15944038-15944087)
chr2 (20-69)||(15952553-15952602)
chr2 (20-69)||(18500748-18500797)
chr2 (20-69)||(35139129-35139178)
chr2 (20-69)||(35147465-35147514)
chr2 (20-69)||(42565429-42565478)
chr2 (20-69)||(42574053-42574102)
chr2 (25-69)||(18972593-18972637)
chr2 (26-69)||(11874224-11874267)
chr2 (25-72)||(13059975-13060022)
chr2 (26-69)||(24690622-24690665)
chr2 (26-69)||(41233323-41233366)
[»] scaffold0306 (1 HSPs)
scaffold0306 (26-69)||(16178-16221)
[»] scaffold0301 (1 HSPs)
scaffold0301 (26-69)||(9433-9476)
[»] scaffold0119 (1 HSPs)
scaffold0119 (20-67)||(39710-39757)
[»] scaffold0065 (1 HSPs)
scaffold0065 (26-69)||(43734-43777)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 3e-46; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 29150243 - 29150122
Alignment:
Q  8 caaatacatactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccctttaacttgtcttaacgttctattatgctcttcatcttt 107  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  29150243 caaacacatgctcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccctttaacttgtcttaacgtgctattctgctcttcatcttt 29150144  T
Q  108 tctttctgcccctatgcttctc 129  Q
    ||||||||| | ||| ||||||    
T  29150143 tctttctgctcatattcttctc 29150122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 38853881 - 38853930
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||||||    
T  38853881 cacaccaaaagttctcttgagttgtcaaagaatttttctctcttctccct 38853930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2574822 - 2574875
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||||||| ||||||||||| |||| ||| |||| ||||||||||||    
T  2574822 tacttacatcaaaagttctcttgagttgtcaaagaacttttatctcttctccct 2574875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 3381983 - 3381934
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  3381983 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 3381934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 8658017 - 8658066
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  8658017 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 8658066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 19737552 - 19737503
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  19737552 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 19737503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 20548898 - 20548947
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  20548898 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 20548947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 39744969 - 39744920
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  39744969 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 39744920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 39991415 - 39991468
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||||| |||||| |||||| |||| |||| ||| |||||||||||||||||    
T  39991415 tactcacaccaaaagttctctttagttgtcaaagaacttttctctcttctccct 39991468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 50188312 - 50188361
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  50188312 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 50188361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 55081186 - 55081239
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||||||  ||||| ||||||||||| |||| || ||||||||||||||||||    
T  55081186 tactcacactaaaagttctcttgagttgtcaaagagtttttctctcttctccct 55081239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 55792776 - 55792727
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||| |||||||||||| ||| |||||||||||||||||    
T  55792776 cacaccaaaagttctattgagttatcaaagaacttttctctcttctccct 55792727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 8093816 - 8093773
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  8093816 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 8093773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 8102621 - 8102578
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  8102621 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 8102578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 26186189 - 26186138
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 71  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  26186189 cacaccaaaagttctcttgagttgtcaaagaatttttctctcttctcccttt 26186138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 23349615 - 23349572
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||    
T  23349615 aaaagttctcttgagttgtcaaagaatttttctctcttctccct 23349572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 24956379 - 24956330
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  24956379 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 24956330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 24964839 - 24964790
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  24964839 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 24964790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 25041808 - 25041759
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  25041808 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 25041759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 25526707 - 25526756
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  25526707 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 25526756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 25533389 - 25533438
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  25533389 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 25533438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 28844456 - 28844505
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  28844456 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 28844505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 28853066 - 28853115
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  28853066 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 28853115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 30249841 - 30249890
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  30249841 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 30249890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 36448771 - 36448820
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  36448771 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 36448820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 36455155 - 36455204
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  36455155 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 36455204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 37048884 - 37048933
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  37048884 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 37048933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 1727700 - 1727657
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  1727700 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 1727657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 43597587 - 43597544
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  43597587 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 43597544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 43630381 - 43630338
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  43630381 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 43630338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 19367986 - 19368037
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 71  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  19367986 cacaccaaaagttctcttgagttgtcaaagaatttttctctcttctcccttt 19368037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 9352794 - 9352848
Alignment:
Q  15 atactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||||||| |||||| ||||||||||| |||| | |||||||||||||||||||    
T  9352794 atactcacaccaaaagttctcttgagttttcaaagcatttttctctcttctccct 9352848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 31064557 - 31064513
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||    
T  31064557 caaaagttctcttgagttgtcaaagaatttttctctcttctccct 31064513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 3432436 - 3432393
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||    
T  3432436 aaaagttctcttgagttgtcaatgaacttttctctcttctccct 3432393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 51968458 - 51968501
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||    
T  51968458 aaaagttctcttgagttgtcaaagaatttttctctcttctccct 51968501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 8770204 - 8770162
Alignment:
Q  27 aaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| ||||||||||| |||| |||||||||||||||||||||    
T  8770204 aaagttctcttgagttgtcaaagaatttttctctcttctccct 8770162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 9327948 - 9328002
Alignment:
Q  15 atactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||| |||||| ||||||||||| |||| | |||||||||||||||||||    
T  9327948 atacttacaccaaaagttctcttgagttttcaaagcatttttctctcttctccct 9328002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 2416245 - 2416196
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  2416245 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 2416196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 15473408 - 15473359
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  15473408 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 15473359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 20429887 - 20429932
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctcccttt 71  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  20429887 aaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 20429932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 47108896 - 47108945
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  47108896 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 47108945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 44832089 - 44832045
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  44832089 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 44832045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 31540497 - 31540540
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  31540497 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 31540540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 31549066 - 31549109
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  31549066 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 31549109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 19950429 - 19950376
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||||| ||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  19950429 tactcacctcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 19950376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 19954883 - 19954830
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||||  |||||| ||||||||||| |||| |||||||||||||||||||||    
T  19954883 tactcaccccaaaagttctcttgagttgtcaaagaatttttctctcttctccct 19954830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 32000288 - 32000339
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 71  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  32000288 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 32000339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 32007257 - 32007308
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 71  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  32007257 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 32007308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 4543779 - 4543832
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||||  |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  4543779 tactcaccccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 4543832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 21640645 - 21640698
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||||  |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  21640645 tactcaccccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 21640698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 32025193 - 32025144
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  32025193 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 32025144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 39837112 - 39837063
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  39837112 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 39837063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 39845154 - 39845105
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  39845154 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 39845105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 22156523 - 22156479
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  22156523 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 22156479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 30938825 - 30938868
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  30938825 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 30938868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 6851554 - 6851505
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  6851554 cacatcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 6851505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 29477742 - 29477795
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  29477742 tactcacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 29477795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 44412855 - 44412806
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||||||    
T  44412855 cacaccaaaagttctcttgagttgtcaaagaatttttctctcttctccct 44412806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 28415656 - 28415702
Alignment:
Q  23 atcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  28415656 atcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 28415702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 4831883 - 4831839
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  4831883 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 4831839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 6897895 - 6897939
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  6897895 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 6897939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 12978998 - 12979041
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  12978998 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 12979041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 13832021 - 13832064
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  13832021 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 13832064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 13840051 - 13840094
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  13840051 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 13840094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 18303925 - 18303882
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  18303925 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 18303882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 20452191 - 20452142
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||||||| |||||||||||||||||    
T  20452191 cacaccaaaagttctcttgagttgtcaatgaacttttctctcttctccct 20452142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 26896976 - 26897020
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||    
T  26896976 caaaagttctcttgagttgtcaaagaatttttctctcttctccct 26897020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 32814555 - 32814605
Alignment:
Q  16 tactcacatcaaaagctctcttgagttatcaatgaatttttctctcttctc 66  Q
    |||||||  |||||| |||||||||||||||| ||| ||||||||||||||    
T  32814555 tactcaccccaaaagttctcttgagttatcaaagaacttttctctcttctc 32814605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 19714208 - 19714257
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  19714208 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 19714257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 19899476 - 19899525
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  19899476 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 19899525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 20459008 - 20458959
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  20459008 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 20458959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 22232151 - 22232102
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  22232151 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 22232102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 25506072 - 25506023
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  25506072 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 25506023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 3917134 - 3917086
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccc 68  Q
    |||| |||||| ||||||||||| |||| ||| ||||||||||||||||    
T  3917134 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccc 3917086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 30824062 - 30824019
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  30824062 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 30824019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 35091202 - 35091159
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  35091202 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 35091159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 14880856 - 14880807
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  14880856 cacatcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 14880807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 14892671 - 14892622
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  14892671 cacatcaaaagttctcttgagttgtcaaagaacttttctctcttctccct 14892622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 68673 - 68724
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 71  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  68673 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 68724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 74766 - 74817
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcccttt 71  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  74766 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcccttt 74817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 14398132 - 14398081
Alignment:
Q  19 tcacatcaaaagctctcttgagttatcaatgaatttttctctcttctccctt 70  Q
    |||||||||||| | ||||||||| ||||  |||||||||||||||||||||    
T  14398132 tcacatcaaaagttatcttgagttgtcaaataatttttctctcttctccctt 14398081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 12558375 - 12558436
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctcc--ctttaacttgtcttaac 84  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||  ||||||||||| |||||    
T  12558375 caaaagttctcttgagttgtcaaagaacttttctctcttctccctctttaacttgtgttaac 12558436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 8606680 - 8606729
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  8606680 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 8606729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 9524960 - 9524911
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  9524960 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 9524911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 13105184 - 13105135
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  13105184 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 13105135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 13111341 - 13111292
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  13111341 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 13111292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 14887573 - 14887524
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  14887573 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 14887524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 21638103 - 21638054
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  21638103 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 21638054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 23287672 - 23287623
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  23287672 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 23287623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 48060274 - 48060225
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  48060274 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 48060225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 16983563 - 16983519
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||| ||||||||||| ||||  ||||||||||||||||||||    
T  16983563 caaaagttctcttgagttgtcaaataatttttctctcttctccct 16983519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 8154180 - 8154137
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  8154180 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 8154137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 16815396 - 16815349
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcc 67  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||    
T  16815396 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcc 16815349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 17934592 - 17934639
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcc 67  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||    
T  17934592 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcc 17934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 41007101 - 41007144
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  41007101 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 41007144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 41015880 - 41015923
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  41015880 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 41015923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 18289 - 18240
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  18289 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 18240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 32769 - 32720
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||| |||||||||||| ||| |||||||||||||||||    
T  32769 cacaccaaaagttcttttgagttatcaaagaacttttctctcttctccct 32720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 89412 - 89363
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  89412 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 89363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 33265 - 33216
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  33265 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 33216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 24110 - 24159
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  24110 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 24159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 5870650 - 5870601
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  5870650 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 5870601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 5873792 - 5873743
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  5873792 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 5873743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 15944087 - 15944038
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  15944087 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 15944038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 15952602 - 15952553
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  15952602 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 15952553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 18500748 - 18500797
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  18500748 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 18500797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 35139129 - 35139178
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  35139129 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 35139178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 35147465 - 35147514
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  35147465 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 35147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 42565478 - 42565429
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  42565478 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 42565429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 42574102 - 42574053
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  42574102 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctccct 42574053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 18972637 - 18972593
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||    
T  18972637 caaaagttctcttgagttgtcaaagaacttttctctcttctccct 18972593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 11874224 - 11874267
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  11874224 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 11874267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 13059975 - 13060022
Alignment:
Q  25 caaaagctctcttgagttatcaatgaatttttctctcttctcccttta 72  Q
    |||||| ||||||||||| |||| ||| ||||||||||||||| ||||    
T  13059975 caaaagttctcttgagttttcaaagaacttttctctcttctcctttta 13060022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 24690622 - 24690665
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  24690622 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 24690665  T

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Target: chr2; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 41233366 - 41233323
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  41233366 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 41233323  T

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Target: scaffold0306 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 16178 - 16221
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  16178 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 16221  T

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Target: scaffold0301 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 9433 - 9476
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  9433 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 9476  T

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Target: scaffold0119 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 39757 - 39710
Alignment:
Q  20 cacatcaaaagctctcttgagttatcaatgaatttttctctcttctcc 67  Q
    |||| |||||| ||||||||||| |||| ||| |||||||||||||||    
T  39757 cacaccaaaagttctcttgagttgtcaaagaacttttctctcttctcc 39710  T

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Target: scaffold0065 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 43777 - 43734
Alignment:
Q  26 aaaagctctcttgagttatcaatgaatttttctctcttctccct 69  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||||    
T  43777 aaaagttctcttgagttgtcaaagaacttttctctcttctccct 43734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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