View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-27 (Length: 127)
Name: Solexa-NF5855-27
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 1969680 - 1969561
Alignment:
| Q |
8 |
attcattctagttattaatgaaaaatgattatacaattcaacaacaacctctcttggtagtgtaatataaatctatgattatcatctgctttaaaatggc |
107 |
Q |
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| T |
1969680 |
attcattctagttattaatgaaaaatgattatacaattcaacaacaacctctcttggtagtgtaatataaatctatgattatcatctgctttaaaatggc |
1969581 |
T |
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| Q |
108 |
tatgattactttcattgatg |
127 |
Q |
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| T |
1969580 |
tatgattactttcattgatg |
1969561 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 5890573 - 5890605
Alignment:
| Q |
82 |
atgattatcatctgctttaaaatggctatgatt |
114 |
Q |
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| T |
5890573 |
atgattatcatctgctttaaaatgactatgatt |
5890605 |
T |
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