View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-29 (Length: 126)
Name: Solexa-NF5855-29
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-29 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 26483072 - 26482954
Alignment:
| Q |
8 |
tatgatatatcaatgaagatgattttcatattttttggtacaaagatgtccctgtcaaagtcaatcttttgtgtggcgcctctttctcaaccgtttacca |
107 |
Q |
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| T |
26483072 |
tatgatatatcaatgaagatcatttccatgttttttggcacaaagatgtctctgtcaaagtcaatcttttgtgtggcgcctctttctcaaccgtttacca |
26482973 |
T |
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| Q |
108 |
acaaacgacaatttgataa |
126 |
Q |
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| T |
26482972 |
acaaacgacaatttgataa |
26482954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 34384249 - 34384140
Alignment:
| Q |
14 |
atatcaatgaagatgattttcatattttttggtacaaagatgtccctgtcaaagtcaatc-ttttgtgtggcgcctctttctcaaccgtttaccaacaaa |
112 |
Q |
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| T |
34384249 |
atatcaattaagatgacttccatattttatggcacaaagatgtccctctcaaattcaatctttttgtgtggtgcctacttctcaatcgtctaccgacaag |
34384150 |
T |
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| Q |
113 |
cgacaatttg |
122 |
Q |
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| T |
34384149 |
cgacaatttg |
34384140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 1852086 - 1852192
Alignment:
| Q |
17 |
tcaatgaagatgattttcatattttttggtacaaagatgtccctgtcaaagtcaatc-ttttgtgtggcgcctctttctcaaccgtttaccaacaaacga |
115 |
Q |
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| T |
1852086 |
tcaatgaagatgcctttcatgtgttttggcataaagatgtccctctcaaggtcaatctttttatgtggcacctccttcttaatcgatcaccaacaaacaa |
1852185 |
T |
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| Q |
116 |
caatttg |
122 |
Q |
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| T |
1852186 |
caatttg |
1852192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 21081362 - 21081464
Alignment:
| Q |
12 |
atatatcaatgaagatgattttcatattttttggtacaaagatgtccctgtcaaagtcaatc-ttttgtgtggcgcctctttctcaaccgtttaccaaca |
110 |
Q |
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| T |
21081362 |
atatatcaatgaagatgacttccatgttttttggaataaagatgtccctcccaaggttaatctttttgtgtggcgtctccttctcaaccgtcttccaaca |
21081461 |
T |
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| Q |
111 |
aac |
113 |
Q |
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| T |
21081462 |
aac |
21081464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 29537464 - 29537356
Alignment:
| Q |
15 |
tatcaatgaagatgattttcatattttttggtacaaagatgtccctgtcaaagtcaatc-ttttgtgtggcgcctctttctcaaccgtttaccaacaaac |
113 |
Q |
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| T |
29537464 |
tatcaatgaagatgtcatccatgttttttggtacaaaaatgtccctctcaaattcaagctttttgtgtggcgccttcttttcaacagcttaccaataaac |
29537365 |
T |
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| Q |
114 |
gacaatttg |
122 |
Q |
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| T |
29537364 |
gacaatttg |
29537356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 19104378 - 19104283
Alignment:
| Q |
14 |
atatcaatgaagatgattttcatattttttggtacaaagatgtccctgtcaaagtcaa-tcttttgtgtggcgcctctttctcaaccgtttaccaa |
108 |
Q |
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| T |
19104378 |
atatcaatgaagatgacttccaggttttttgacacaaagatgtcccttttgaagtcaatttttttgtgtggcgtctccttctaaaccctttaccaa |
19104283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 45092031 - 45092096
Alignment:
| Q |
62 |
tcaaagtcaatctttt-gtgtggcgcctctttctcaaccgtttaccaacaaacgacaatttgataa |
126 |
Q |
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| T |
45092031 |
tcaaagtcaatctttttgtgtagtgccatcttctcaatcgcttaccaacaaacgacaatttgataa |
45092096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 38596783 - 38596842
Alignment:
| Q |
64 |
aaagtcaatctttt-gtgtggcgcctctttctcaaccgtttaccaacaaacgacaatttg |
122 |
Q |
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| T |
38596783 |
aaagtcaatcttttcgtgtggcgccttcttctcaaccgcttaccaacaaatgacaatttg |
38596842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 133850 - 133931
Alignment:
| Q |
42 |
ttggtacaaagatgtccctgtcaaagtcaatctttt-gtgtggcgcctctttctcaaccgtttaccaacaaacgacaatttg |
122 |
Q |
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| T |
133850 |
ttggcacacagatgtacctctgaaagttaatcttttcgtgtggcgccttcttctcaaccgcttaccaacaaatgacaatttg |
133931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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