View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-3 (Length: 225)
Name: Solexa-NF5855-3
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-3 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 36772822 - 36772612
Alignment:
| Q |
10 |
tctttgtgtagttccaagatttgccataaaagcattgaaatggaaattggaaaatcaaagaatggatcaattgaaagagcttctgatgaacacaaaattt |
109 |
Q |
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| T |
36772822 |
tctttgtgtagttccaagatttgccataaaagctttgaaatggaaattggaaaatcaaagaatggatcaattgaaagagcttctgatgaacacaaaattt |
36772723 |
T |
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| Q |
110 |
atttgaggaatttgttccaaatgttttccacaacttatgtggattagacttgtatctgtttaatgcttgatatacatatataaaatccagagaggacatc |
209 |
Q |
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| T |
36772722 |
atttgagaaatttgttccaaatgttttccacaacttatgtggattagacttgtatctgtttaatgcttgatatacatatataaaatccagaggggacatc |
36772623 |
T |
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| Q |
210 |
aaattcttcat |
220 |
Q |
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| T |
36772622 |
aaattcttcat |
36772612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 36770572 - 36770497
Alignment:
| Q |
10 |
tctttgtgtagttccaagatttgccataaaagcattgaaatggaaattggaaaatcaaagaatggatcaattgaaa |
85 |
Q |
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||||||||||||||||||||||||||| | | ||||| || ||| || |||||||||||||||||||||||||| |
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| T |
36770572 |
tctttgtgtagttccaagatttgccatgacacttttgaagtgaaaactgaaaaatcaaagaatggatcaattgaaa |
36770497 |
T |
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