View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5855-31 (Length: 126)

Name: Solexa-NF5855-31
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5855-31
Solexa-NF5855-31
[»] chr8 (5 HSPs)
chr8 (1-126)||(6947831-6947956)
chr8 (37-80)||(5740378-5740421)
chr8 (37-80)||(32879442-32879485)
chr8 (37-80)||(34694570-34694613)
chr8 (43-74)||(38902374-38902405)
[»] chr1 (4 HSPs)
chr1 (39-81)||(39714647-39714689)
chr1 (37-80)||(46607969-46608012)
chr1 (37-80)||(26986080-26986123)
chr1 (37-80)||(35138147-35138190)
[»] chr7 (3 HSPs)
chr7 (37-80)||(2344462-2344505)
chr7 (37-80)||(21574097-21574140)
chr7 (37-80)||(654700-654743)
[»] chr6 (1 HSPs)
chr6 (37-76)||(27904563-27904602)
[»] chr5 (4 HSPs)
chr5 (37-80)||(4603936-4603979)
chr5 (38-81)||(31206401-31206444)
chr5 (37-80)||(32059435-32059478)
chr5 (37-80)||(930481-930524)
[»] chr3 (2 HSPs)
chr3 (37-80)||(48977547-48977590)
chr3 (37-80)||(52455644-52455687)
[»] chr2 (3 HSPs)
chr2 (37-80)||(8192347-8192390)
chr2 (37-80)||(14486984-14487027)
chr2 (37-80)||(39957917-39957960)
[»] scaffold0049 (1 HSPs)
scaffold0049 (37-80)||(66913-66956)
[»] chr4 (2 HSPs)
chr4 (37-80)||(7391960-7392003)
chr4 (37-80)||(46070246-46070289)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 1e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 6947956 - 6947831
Alignment:
Q  1 agacaggtgtataatatggatttaacannnnnnnncttttgaaaactcgttatccaacccaaggaccgactaatccgaggaatctggcaatttacctgag 100  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6947956 agacaggtgtataatatggatttaacattttttttcttttgaaaactcgttatccaacccaaggaccgactaatctgaggaatctggcaatttacctgag 6947857  T
Q  101 cagtgagagccttgatggcttgtttg 126  Q
    ||||||||||||||||||||||||||    
T  6947856 cagtgagagccttgatggcttgtttg 6947831  T

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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 5740378 - 5740421
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| | ||| | ||||||||||||||||||||||    
T  5740378 ttttgaaaactcggtgtccgatccaaggaccgactaatccgagg 5740421  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 32879485 - 32879442
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||||| ||||| | ||||||||||||||    
T  32879485 ttttgaaaactcggtatccaatccaagaatcgactaatccgagg 32879442  T

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Target: chr8; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 34694570 - 34694613
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||||||||| | |||||||| |||||||| ||||    
T  34694570 ttttgaaaactcgttatccgatccaaggacagactaatctgagg 34694613  T

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Target: chr8; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 38902374 - 38902405
Alignment:
Q  43 aaactcgttatccaacccaaggaccgactaat 74  Q
    ||||||| ||||||||||||||||||||||||    
T  38902374 aaactcggtatccaacccaaggaccgactaat 38902405  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 39714647 - 39714689
Alignment:
Q  39 ttgaaaactcgttatccaacccaaggaccgactaatccgagga 81  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  39714647 ttgaaaactcggtatccagcccaaggaccgactaatccgagga 39714689  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 46608012 - 46607969
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  46608012 ttttgaaaactcgatatccgatccaaggaccgactaatccgagg 46607969  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 26986080 - 26986123
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| |||||  ||||||||||||||| |||||||    
T  26986080 ttttgaaaactcggtatccggcccaaggaccgactattccgagg 26986123  T

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Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 35138190 - 35138147
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||    
T  35138190 tttttaaaactcggtatccgatccaaggaccgactaatccgagg 35138147  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 2344505 - 2344462
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  2344505 ttttgaaaactcggtatccgatccaaggaccgactaatccgagg 2344462  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 21574097 - 21574140
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  21574097 ttttgaaaactcggtatccgatccaaggaccgactaatccgagg 21574140  T

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Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 654700 - 654743
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||| ||||||||||||||||    
T  654700 ttttgaaaactcggtatccgatccaagaaccgactaatccgagg 654743  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 27904602 - 27904563
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatcc 76  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  27904602 tttttaaaactcggtatccaacccaaggaccgactaatcc 27904563  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 4603979 - 4603936
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  4603979 ttttgaaaactcggtatccgatccaaggaccgactaatccgagg 4603936  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 31206444 - 31206401
Alignment:
Q  38 tttgaaaactcgttatccaacccaaggaccgactaatccgagga 81  Q
    |||||||||||| |||||  ||||||||||||||||||||||||    
T  31206444 tttgaaaactcggtatccggcccaaggaccgactaatccgagga 31206401  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 32059435 - 32059478
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  32059435 ttttgaaaactcggtatccgatccaaggaccgactaatccgagg 32059478  T

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Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 930481 - 930524
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||    
T  930481 tttttaaaactcgatatccgatccaaggaccgactaatccgagg 930524  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 48977590 - 48977547
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  48977590 ttttgaaaactcggtatccgatccaaggaccgactaatccgagg 48977547  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 52455644 - 52455687
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||||| ||||| | ||||||||||||||    
T  52455644 ttttgaaaactcggtatccaatccaagaatcgactaatccgagg 52455687  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 8192347 - 8192390
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  8192347 ttttgaaaactcggtatccgatccaaggaccgactaatccgagg 8192390  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 14487027 - 14486984
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  14487027 ttttgaaaactcggtatccgatccaaggaccgactaatccgagg 14486984  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 39957960 - 39957917
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||||| ||||| | ||||||||||||||    
T  39957960 ttttgaaaactcggtatccaatccaagaatcgactaatccgagg 39957917  T

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Target: scaffold0049 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 66956 - 66913
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    |||| |||||||| ||||| | ||||||||||||||||||||||    
T  66956 tttttaaaactcggtatccgatccaaggaccgactaatccgagg 66913  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 7391960 - 7392003
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    ||||||||||||| ||||||| | ||| ||||||||||||||||    
T  7391960 ttttgaaaactcggtatccaatcgaagaaccgactaatccgagg 7392003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 46070289 - 46070246
Alignment:
Q  37 ttttgaaaactcgttatccaacccaaggaccgactaatccgagg 80  Q
    |||| |||||||| ||||| ||||||||| ||||||||||||||    
T  46070289 ttttcaaaactcggtatccgacccaaggatcgactaatccgagg 46070246  T

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