View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5855-35 (Length: 119)

Name: Solexa-NF5855-35
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5855-35
Solexa-NF5855-35
[»] chr1 (4 HSPs)
chr1 (8-119)||(15489150-15489262)
chr1 (10-73)||(28467516-28467579)
chr1 (17-71)||(29793847-29793901)
chr1 (10-73)||(6659763-6659826)
[»] chr8 (3 HSPs)
chr8 (12-73)||(4763979-4764040)
chr8 (12-73)||(9700086-9700147)
chr8 (12-73)||(14926906-14926967)
[»] chr6 (2 HSPs)
chr6 (27-76)||(3738201-3738250)
chr6 (10-73)||(4247624-4247687)
[»] chr7 (2 HSPs)
chr7 (10-70)||(39542227-39542287)
chr7 (10-73)||(1418502-1418565)
[»] chr5 (3 HSPs)
chr5 (11-73)||(31723889-31723951)
chr5 (11-73)||(34198505-34198567)
chr5 (10-73)||(42181009-42181072)
[»] chr4 (1 HSPs)
chr4 (41-73)||(44638150-44638182)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 6e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 6e-53
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 15489262 - 15489150
Alignment:
Q  8 caataagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatccgactaggttgtgcattgaaatggagattttctat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15489262 caataagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatccgactaggttgtgcattgaaatggagattttctat 15489163  T
Q  108 gt-tggaaaaagg 119  Q
    || ||||||||||    
T  15489162 gtgtggaaaaagg 15489150  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 28467516 - 28467579
Alignment:
Q  10 ataagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    |||| ||||| ||||| |||||||| ||||| |||||||||||||||| |||||||||||||||    
T  28467516 ataatctctcccaaatagtctcataagtgctaatgctagtaaataaactcaaataagtcaatcc 28467579  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 29793847 - 29793901
Alignment:
Q  17 ctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaat 71  Q
    ||||||||| |||||| | ||||||||||| |||||||||  |||||||||||||    
T  29793847 ctctcaaatagtctcacaagtgcttatgctggtaaataaattcaaataagtcaat 29793901  T

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Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 6659763 - 6659826
Alignment:
Q  10 ataagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    ||||||| || ||||| |||||| | ||||||||||||||| |||| |  ||||||||||||||    
T  6659763 ataagctatcccaaatagtctcacaagtgcttatgctagtagataagctaaaataagtcaatcc 6659826  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 4763979 - 4764040
Alignment:
Q  12 aagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    ||||||||| |||| |||||||||||||||||||||||  ||||   |||||||||||||||    
T  4763979 aagctctcttaaatagtctcataggtgcttatgctagtggataagttcaaataagtcaatcc 4764040  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 9700086 - 9700147
Alignment:
Q  12 aagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    |||||||||||||| |||||| | ||| ||||||||||| |||| | ||||||||| |||||    
T  9700086 aagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatcc 9700147  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 14926967 - 14926906
Alignment:
Q  12 aagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    |||||||||||||  |||||| | |||||||||| |||||||||   |||||||||||||||    
T  14926967 aagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatcc 14926906  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 3738201 - 3738250
Alignment:
Q  27 gtctcataggtgcttatgctagtaaataaacccaaataagtcaatccgac 76  Q
    |||||| | ||||||||||||||| |||||| ||||||||||||||||||    
T  3738201 gtctcacaagtgcttatgctagtagataaactcaaataagtcaatccgac 3738250  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 4247687 - 4247624
Alignment:
Q  10 ataagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    ||||||||||||| || |||||||  ||| |||||| ||||||||||| |||||||||| ||||    
T  4247687 ataagctctctcatatagtctcatgagtgattatgccagtaaataaactcaaataagtcgatcc 4247624  T

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Target: chr7 (Bit Score: 33; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 39542287 - 39542227
Alignment:
Q  10 ataagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaa 70  Q
    ||||||||||| ||| ||||||  | ||||||||||||||| |||||| ||||||||||||    
T  39542287 ataagctctctaaaactgtctcgcaagtgcttatgctagtagataaactcaaataagtcaa 39542227  T

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Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 1418502 - 1418565
Alignment:
Q  10 ataagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    |||||||||| ||||  | |||||| |||||||||| |||| |||| | |||||||||||||||    
T  1418502 ataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatcc 1418565  T

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Target: chr5 (Bit Score: 31; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 31723889 - 31723951
Alignment:
Q  11 taagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    ||||||||  ||||| |||||||| ||| ||||||||||| |||| | |||||||||||||||    
T  31723889 taagctcttacaaatagtctcataagtgtttatgctagtacataagctcaaataagtcaatcc 31723951  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 34198505 - 34198567
Alignment:
Q  11 taagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    ||||||| ||||||| || ||| | ||| ||||| |||||||||||| |||||||||||||||    
T  34198505 taagctcgctcaaatggtatcacaagtgtttatgttagtaaataaactcaaataagtcaatcc 34198567  T

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Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 42181072 - 42181009
Alignment:
Q  10 ataagctctctcaaattgtctcataggtgcttatgctagtaaataaacccaaataagtcaatcc 73  Q
    |||||||||| |||||||||||| |  ||| |||||||||||||||   ||||| |||||||||    
T  42181072 ataagctctcccaaattgtctcacaaatgcatatgctagtaaataagttcaaattagtcaatcc 42181009  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 44638182 - 44638150
Alignment:
Q  41 tatgctagtaaataaacccaaataagtcaatcc 73  Q
    ||||||||||||||||| |||||||||||||||    
T  44638182 tatgctagtaaataaactcaaataagtcaatcc 44638150  T

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