View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5855-38 (Length: 112)
Name: Solexa-NF5855-38
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-38 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 61; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 38449079 - 38449011
Alignment:
| Q |
44 |
catgcttcctcaacatctcgattcatcaatttttctaatataacttcagcaatagtagcaacttgatat |
112 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38449079 |
catgcttcctcaacatctcgattcatccatttttctaatataacttcagcaataggagcaacttgatat |
38449011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 38440691 - 38440625
Alignment:
| Q |
44 |
catgcttcctcaacatctcgattcatcaatttttctaatataacttcagcaatagtagcaacttgat |
110 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38440691 |
catgcttcctcaacatcacgattcatccatttttctaatataacttcagcaataggagcaacttgat |
38440625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38449148 - 38449112
Alignment:
| Q |
1 |
agatgaaaacagtcttgaaaacaagtaaccatggcaa |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38449148 |
agatgaaaacagtcttgaaaacaagtaaccatggcaa |
38449112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38440761 - 38440729
Alignment:
| Q |
1 |
agatgaaaacagtcttgaaaacaagtaaccatg |
33 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
38440761 |
agatgaaaacaatcttgaaaacaagtaaccatg |
38440729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University