View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-39 (Length: 112)
Name: Solexa-NF5855-39
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-39 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 9e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 9e-46
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 36202882 - 36202778
Alignment:
| Q |
8 |
agattatggatgcactaagagtgagagaccaagaagaaaccataattggattatgcgggccagatgaaagaggcaaggcttctgtcacaaccgttatgag |
107 |
Q |
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| T |
36202882 |
agattatggatgcactaagagtgagagaccaaggagaaaacataattggattatgcgggccagatgaaagagtcaaggcttctgtcacaaccgttatgag |
36202783 |
T |
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| Q |
108 |
aagat |
112 |
Q |
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||||| |
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| T |
36202782 |
aagat |
36202778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 36197313 - 36197247
Alignment:
| Q |
18 |
tgcactaagagtgagagaccaagaagaaaccataattggattatgcgggccagatgaaagaggcaag |
84 |
Q |
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| T |
36197313 |
tgcactaagagtgagagaccaaggagaaaatatcattggattatgtgggccagaaaaaagagtcaag |
36197247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 36210431 - 36210380
Alignment:
| Q |
18 |
tgcactaagagtgagagaccaagaagaaaccataattggattatgcgggcca |
69 |
Q |
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| T |
36210431 |
tgcactaagtgtgagagaccaaggagaaaatataatcggattatgcgggcca |
36210380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 36213789 - 36213718
Alignment:
| Q |
8 |
agattatggatgcactaagagtgagagaccaagaagaaaccataattggattatgcgggccagatgaaagag |
79 |
Q |
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| T |
36213789 |
agattacgaatgcattaaaagtgagagaccaaggagaaaatataatcggattatgcggcccggatgaaagag |
36213718 |
T |
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