View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5855-5 (Length: 215)

Name: Solexa-NF5855-5
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5855-5
Solexa-NF5855-5
[»] chr2 (22 HSPs)
chr2 (7-160)||(28526850-28527005)
chr2 (17-160)||(5212024-5212168)
chr2 (17-156)||(3100294-3100437)
chr2 (17-160)||(28572106-28572249)
chr2 (159-215)||(28527200-28527256)
chr2 (16-149)||(7213369-7213505)
chr2 (79-160)||(15859408-15859489)
chr2 (17-144)||(40964948-40965077)
chr2 (9-144)||(41435970-41436104)
chr2 (31-138)||(7650063-7650171)
chr2 (17-144)||(33751356-33751486)
chr2 (65-160)||(42881343-42881438)
chr2 (79-145)||(9724841-9724906)
chr2 (87-160)||(34235017-34235090)
chr2 (96-160)||(33880136-33880199)
chr2 (92-144)||(37028731-37028783)
chr2 (17-144)||(30757650-30757779)
chr2 (17-160)||(31348406-31348552)
chr2 (92-160)||(10818593-10818662)
chr2 (96-137)||(28925937-28925978)
chr2 (92-144)||(8550724-8550775)
chr2 (96-160)||(37529137-37529201)
[»] chr7 (28 HSPs)
chr7 (17-160)||(7425944-7426089)
chr7 (65-160)||(38181940-38182035)
chr7 (19-160)||(46288497-46288640)
chr7 (17-160)||(12308275-12308419)
chr7 (14-144)||(30462908-30463041)
chr7 (51-160)||(11616493-11616602)
chr7 (51-144)||(31581525-31581618)
chr7 (99-144)||(33584543-33584588)
chr7 (17-144)||(2846758-2846888)
chr7 (65-144)||(34963893-34963972)
chr7 (17-144)||(39498569-39498699)
chr7 (16-150)||(33774119-33774254)
chr7 (99-160)||(30659546-30659607)
chr7 (79-160)||(37264273-37264354)
chr7 (65-142)||(40590909-40590986)
chr7 (51-142)||(23703847-23703939)
chr7 (56-144)||(45890919-45891006)
chr7 (17-109)||(48981274-48981369)
chr7 (17-144)||(29257442-29257572)
chr7 (16-137)||(37157062-37157188)
chr7 (96-145)||(9602838-9602887)
chr7 (96-145)||(9830409-9830458)
chr7 (92-145)||(23111611-23111664)
chr7 (51-144)||(29434662-29434755)
chr7 (65-142)||(46095532-46095609)
chr7 (79-144)||(47453964-47454029)
chr7 (96-160)||(32775960-32776024)
chr7 (96-160)||(38589711-38589775)
[»] chr5 (22 HSPs)
chr5 (17-160)||(42575705-42575851)
chr5 (12-160)||(22582938-22583090)
chr5 (17-160)||(35646156-35646303)
chr5 (17-160)||(39008025-39008169)
chr5 (64-160)||(4412328-4412424)
chr5 (17-160)||(8369763-8369910)
chr5 (17-144)||(3725082-3725211)
chr5 (30-144)||(858246-858360)
chr5 (51-140)||(25814296-25814385)
chr5 (96-156)||(8692889-8692949)
chr5 (20-125)||(7276282-7276389)
chr5 (65-144)||(11099560-11099639)
chr5 (17-144)||(33012249-33012379)
chr5 (17-145)||(4044559-4044690)
chr5 (51-160)||(13135685-13135794)
chr5 (29-144)||(15814570-15814686)
chr5 (16-144)||(6610729-6610862)
chr5 (96-142)||(7613684-7613730)
chr5 (99-144)||(17243037-17243081)
chr5 (118-159)||(43525477-43525518)
chr5 (96-144)||(13716987-13717035)
chr5 (96-144)||(20189869-20189917)
[»] chr6 (10 HSPs)
chr6 (10-160)||(3604666-3604819)
chr6 (29-160)||(15081331-15081464)
chr6 (56-160)||(4238359-4238462)
chr6 (96-160)||(26356247-26356310)
chr6 (65-160)||(31265726-31265820)
chr6 (94-160)||(9354509-9354575)
chr6 (59-144)||(30064031-30064116)
chr6 (96-160)||(33921535-33921599)
chr6 (118-149)||(34803784-34803815)
chr6 (79-144)||(15321307-15321372)
[»] chr8 (15 HSPs)
chr8 (16-144)||(38252520-38252651)
chr8 (51-158)||(32241492-32241599)
chr8 (65-160)||(33190975-33191070)
chr8 (17-144)||(5391943-5392074)
chr8 (17-158)||(2119611-2119755)
chr8 (96-160)||(33925150-33925214)
chr8 (65-144)||(29615744-29615823)
chr8 (65-144)||(39171489-39171568)
chr8 (99-160)||(28791288-28791349)
chr8 (17-144)||(44615447-44615578)
chr8 (96-150)||(31132706-31132761)
chr8 (79-160)||(14689920-14690001)
chr8 (64-144)||(31410690-31410770)
chr8 (79-160)||(41726481-41726562)
chr8 (96-144)||(33746301-33746348)
[»] chr4 (33 HSPs)
chr4 (65-160)||(18849825-18849920)
chr4 (65-160)||(44020828-44020923)
chr4 (17-142)||(48740416-48740543)
chr4 (65-144)||(54729565-54729644)
chr4 (97-155)||(31862772-31862830)
chr4 (18-160)||(42024267-42024412)
chr4 (31-144)||(29644266-29644380)
chr4 (99-160)||(25149431-25149492)
chr4 (64-144)||(1825330-1825410)
chr4 (96-144)||(38976968-38977016)
chr4 (64-144)||(39979725-39979805)
chr4 (35-142)||(41203652-41203760)
chr4 (20-142)||(42544108-42544232)
chr4 (65-144)||(49812175-49812254)
chr4 (99-149)||(4354428-4354478)
chr4 (51-144)||(8294963-8295056)
chr4 (65-145)||(35998198-35998279)
chr4 (92-144)||(22496759-22496811)
chr4 (79-159)||(42670437-42670517)
chr4 (17-144)||(41710226-41710356)
chr4 (64-144)||(49448784-49448866)
chr4 (118-160)||(1796308-1796350)
chr4 (118-160)||(10099791-10099833)
chr4 (118-160)||(29550793-29550835)
chr4 (29-135)||(34020943-34021051)
chr4 (79-144)||(41436441-41436506)
chr4 (99-144)||(42185878-42185923)
chr4 (99-160)||(49306567-49306628)
chr4 (64-144)||(3685956-3686036)
chr4 (92-144)||(25581382-25581434)
chr4 (17-145)||(39052982-39053114)
chr4 (96-160)||(42132790-42132854)
chr4 (96-144)||(47787929-47787977)
[»] chr3 (28 HSPs)
chr3 (66-160)||(21296569-21296663)
chr3 (17-144)||(33994553-33994682)
chr3 (51-160)||(54122290-54122398)
chr3 (96-160)||(53051003-53051067)
chr3 (17-144)||(38600888-38601017)
chr3 (17-144)||(39365099-39365229)
chr3 (113-160)||(43639582-43639629)
chr3 (65-144)||(46786063-46786142)
chr3 (17-160)||(51164844-51164993)
chr3 (51-144)||(41031504-41031597)
chr3 (96-160)||(1334847-1334910)
chr3 (96-144)||(48744202-48744250)
chr3 (96-144)||(54493885-54493933)
chr3 (61-160)||(54845582-54845683)
chr3 (17-144)||(32023183-32023312)
chr3 (79-160)||(54021524-54021604)
chr3 (99-149)||(32977867-32977917)
chr3 (59-144)||(8706088-8706173)
chr3 (59-144)||(9057975-9058060)
chr3 (119-160)||(50736101-50736142)
chr3 (119-160)||(50776713-50776754)
chr3 (96-160)||(1923067-1923131)
chr3 (96-144)||(16134486-16134533)
chr3 (16-160)||(21585476-21585623)
chr3 (116-160)||(32827370-32827414)
chr3 (96-144)||(39866635-39866683)
chr3 (96-160)||(44219099-44219163)
chr3 (99-159)||(48409564-48409624)
[»] chr1 (38 HSPs)
chr1 (17-160)||(2219515-2219659)
chr1 (65-160)||(5442287-5442381)
chr1 (65-160)||(36784260-36784355)
chr1 (51-144)||(27698744-27698837)
chr1 (17-160)||(11425936-11426082)
chr1 (65-144)||(19533002-19533081)
chr1 (28-142)||(48242675-48242790)
chr1 (28-160)||(49494230-49494363)
chr1 (56-142)||(17342765-17342851)
chr1 (51-144)||(11324180-11324273)
chr1 (51-144)||(11482201-11482294)
chr1 (96-144)||(28277121-28277169)
chr1 (96-144)||(30749732-30749780)
chr1 (96-144)||(30771183-30771231)
chr1 (56-144)||(46536277-46536365)
chr1 (64-144)||(52830496-52830576)
chr1 (88-138)||(7787646-7787696)
chr1 (99-144)||(8327697-8327742)
chr1 (59-136)||(49944731-49944807)
chr1 (100-144)||(28839321-28839364)
chr1 (64-144)||(34877173-34877252)
chr1 (96-144)||(38664378-38664426)
chr1 (67-142)||(7785359-7785433)
chr1 (65-144)||(10370270-10370349)
chr1 (99-149)||(16451611-16451661)
chr1 (99-149)||(16460764-16460814)
chr1 (99-144)||(3555638-3555683)
chr1 (118-159)||(7075471-7075512)
chr1 (99-160)||(12267698-12267759)
chr1 (99-160)||(36232856-36232917)
chr1 (32-144)||(36467278-36467391)
chr1 (127-160)||(45049040-45049073)
chr1 (99-144)||(45889331-45889376)
chr1 (96-160)||(4466221-4466285)
chr1 (96-144)||(10587664-10587712)
chr1 (96-160)||(24131467-24131531)
chr1 (96-160)||(51049486-51049549)
chr1 (96-160)||(52432289-52432353)
[»] scaffold0006 (1 HSPs)
scaffold0006 (44-160)||(229749-229864)
[»] scaffold0007 (1 HSPs)
scaffold0007 (65-160)||(230203-230297)
[»] scaffold0321 (1 HSPs)
scaffold0321 (65-144)||(9631-9710)
[»] scaffold0001 (1 HSPs)
scaffold0001 (99-144)||(394758-394803)
[»] scaffold0058 (1 HSPs)
scaffold0058 (96-144)||(14433-14481)
[»] scaffold0086 (1 HSPs)
scaffold0086 (64-145)||(5764-5844)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 28526850 - 28527005
Alignment:
Q  7 aaatatttgctactccctccgtccata--ataaccgagccatttgcaaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaat 104  Q
    |||||||||||| ||| ||||||||||  ||||||||| ||||| ||||| |||||||||||||||||||||| |||||||  ||| |||||||||||||    
T  28526850 aaatatttgctagtccatccgtccatataataaccgagtcatttacaaaaaaagtgtcataaaataactgaatcatttcacttttcaatataatattaat 28526949  T
Q  105 tacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  28526950 tacttttttctctttataactataattaatattactttcacaacttccaattcaat 28527005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 5212168 - 5212024
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctct 115  Q
    |||| ||||||||| | ||||| |||||||||||||||| ||  ||| |||||||||||| |||||||||  ||| ||| |||||||||||||||| |      
T  5212168 tacttcctccgtcccacaataatcgagccatttgcaaaaaaaaagtcctaaaataactgagttatttcacttttcaatacaatattaattactttttttc 5212069  T
Q  116 ctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||| | ||||||||||||||||||||||||  ||||||||    
T  5212068 ctttataaatttaattaatactactttcacaactttcaattcaat 5212024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 3100294 - 3100437
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaa---gtgtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    |||||||||||||| | |||||| ||||||||||||||| ||   |||||  ||||||||||| | |||||||  ||| ||| ||||||||||||||||     
T  3100294 tactccctccgtcccacaataactgagccatttgcaaaaaaaaaagtgtctcaaaataactgagtcatttcacttttcaatacaatattaattacttttt 3100393  T
Q  113 tctctttataactataattaatactactttcacaacttctaatt 156  Q
    || |||| ||||| ||||||||||||||||||||||||| ||||    
T  3100394 tccctttgtaactctaattaatactactttcacaacttccaatt 3100437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 28572106 - 28572249
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaa--agaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| | |||||| ||| ||||||||||  | |||||||  ||||||||||| | |||||||  ||| ||| |||||||||||||||       
T  28572106 tactccctccgtcccacaataactgagacatttgcaaataaaaagtgtcccaaaataactgagtcatttcacttttcaatacaatattaattacttt--- 28572202  T
Q  114 ctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28572203 ctctttataactgtaattaatactactttcacaacttccaattcaat 28572249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 28527200 - 28527256
Alignment:
Q  159 atgaaccttaaaattatgagcaatgataggtagacacccttaattgtacaccccttt 215  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28527200 atgaatcttaaaattatgagcaatgataggtagacacccttaattgtacaccccttt 28527256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 7213369 - 7213505
Alignment:
Q  16 ctactccctccgtcc-ataataaccgagccatttgcaaaaga--agtgtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    ||||||||||||||| |||||||  ||| ||||||||||| |  ||||||  ||||||| | ||| |||||||  ||| ||| ||||||||||||||||     
T  7213369 ctactccctccgtcccataataagtgagtcatttgcaaaaaataagtgtcccaaaataattaaatcatttcacttttcaatacaatattaattacttttt 7213468  T
Q  113 tctctttataactataattaatactactttcacaact 149  Q
     |  ||||||||| |||||||||||||||||||||||    
T  7213469 cccttttataactctaattaatactactttcacaact 7213505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 15859489 - 15859408
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||  ||| ||| |||||||||||||||| || |||||||||| ||||||| | ||||||||||||||||||||||||    
T  15859489 atttcacttttcaatacaatattaattacttttttccctttataactctaattaacattactttcacaacttctaattcaat 15859408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 40964948 - 40965077
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaa--gaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    ||||||||| |||| |||||||| ||| |||||||||||  ||| ||||  ||||||||||| |||||| |   ||| ||| |||||||||||||||| |    
T  40964948 tactccctcagtcccataataactgagtcatttgcaaaaaagaaatgtcccaaaataactgagttattt-atttttcaatacaatattaattactttttt 40965046  T
Q  114 ctctttataactataattaatactactttca 144  Q
    | |||||||||| ||||||||| ||||||||    
T  40965047 ccctttataactctaattaatattactttca 40965077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 41435970 - 41436104
Alignment:
Q  9 atatttgctactccctccgt-ccataataaccgagccatttgcaaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattac 107  Q
    ||||||| |||||| ||||| |||||||||| |||||| ||  |||| | || |||  |||||||||| | |||||||  ||| ||| ||||||||||||    
T  41435970 atatttgttactccttccgttccataataactgagccaattaaaaaaaatgtttca--aaataactgagtcatttcacttttcaatacaatattaattac 41436067  T
Q  108 ttttctctctttataactataattaatactactttca 144  Q
    ||||  |  ||||||||| ||||||||||||||||||    
T  41436068 tttttcccttttataactctaattaatactactttca 41436104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 7650171 - 7650063
Alignment:
Q  31 ataataaccgagccatttgcaaaagaag-tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataa 129  Q
    |||||||| ||| ||||||||||| ||  | || |||||||||||||| |||||||  ||  ||| |||||||||||||||| ||  ||||||||| |||    
T  7650171 ataataacggagtcatttgcaaaaaaaaatatcttaaaataactgaatcatttcacttttaaatacaatattaattacttttttccttttataactctaa 7650072  T
Q  130 ttaatacta 138  Q
    |||||||||    
T  7650071 ttaatacta 7650063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 33751356 - 33751486
Alignment:
Q  17 tactccctccgtc-cataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    ||||||||||||| |||| |||| || |||||| |||  || |||||||  ||||||| ||| | |||||||  ||| ||| |  ||||||||||||| |    
T  33751356 tactccctccgtctcatactaactgaaccattttcaataaaaaagtgtccaaaaataaatgagtcatttcacttttcaatacatcattaattactttttt 33751455  T
Q  114 ctctttataactataattaatactactttca 144  Q
    | |||||||||| ||||||||||||||||||    
T  33751456 ccctttataactctaattaatactactttca 33751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 42881438 - 42881343
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||||| |||||||  ||| ||| |||||||||||||||| ||  |||| |||| || ||||||||||| |||  ||||| ||||||||    
T  42881438 aaaataactgaatcatttcacttttcaatacaatattaattacttttttccttttacaactctacttaatactactctcatcacttccaattcaat 42881343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 9724841 - 9724906
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcac 145  Q
    |||||||  ||| ||| |||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  9724841 atttcacttttcaatacaatattaattactttttt-tctttataactctaattaatactactttcac 9724906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 34235017 - 34235090
Alignment:
Q  87 attcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||| |||||||||||||||||||| |   ||||||||| |||||||||||| |||||  ||| ||||||||||    
T  34235017 attcaatataatattaattactttttttcatttataactttaattaatactattttcatcactcctaattcaat 34235090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 33880136 - 33880199
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| || |||||||||| ||||||||| ||||||||| ||| | ||||||||    
T  33880136 aatattaattactttt-tccctttataactctaattaatattactttcaccactcccaattcaat 33880199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 37028731 - 37028783
Alignment:
Q  92 atataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||||| |||| ||| ||||||||| ||||||||| ||||||||    
T  37028731 atataatattaattatttttttctatttataactctaattaatattactttca 37028783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 30757779 - 30757650
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaag--aagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| |||||||| ||||||||||||||||  |||||||  ||||| | |||   | | |||  ||| ||| |||||||||||||||| |    
T  30757779 tactccctccgtcccataataactgagccatttgcaaaagaaaagtgtccaaaaattaatgagcca-tacacttttcaatacaatattaattactttttt 30757681  T
Q  114 ctctttataactataattaatactactttca 144  Q
       ||||||||| ||||||||||||||||||    
T  30757680 tcttttataactctaattaatactactttca 30757650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 31348406 - 31348552
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaag--tgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| |||||||| ||||||||||||||| ||   |||| || || || |||   ||||||   ||| ||| |||||||||||||||| |    
T  31348406 tactccctccgtcccataataactgagccatttgcaaaaaaatattgtcctagaaaaattgacccatttcaattttcaatacaatattaattactttttt 31348505  T
Q  114 ctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |   |||||||  ||||||||||||||||||| | | ||||||||||    
T  31348506 ccaattataacactaattaatactactttcaccattcctaattcaat 31348552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 10818593 - 10818662
Alignment:
Q  92 atataatattaattac-ttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| |||| || |||||||||| |||||||||  |||||||  ||| ||||||||||    
T  10818593 atataatattaattactttttttccctttataactctaattaatatcactttcatcactcctaattcaat 10818662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 28925978 - 28925937
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatact 137  Q
    |||||||||||||||| || |||||||||| |||||||||||    
T  28925978 aatattaattacttttttccctttataactctaattaatact 28925937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 8550775 - 8550724
Alignment:
Q  92 atataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||| |||||||||||||| | |  |||||||||||||||||||||||||||    
T  8550775 atatagtattaattactttttt-taattataactataattaatactactttca 8550724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 37529201 - 37529137
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| |    |||||||| ||||||||| ||||||||| ||||| ||||||||    
T  37529201 aatattaattactttttttcaattataactctaattaatattactttcaccacttccaattcaat 37529137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 7426089 - 7425944
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctct 115  Q
    |||||||||||||| | |||||| ||||||||||||||| |||||||  |||||||||||   |||||||  ||| ||| |||||||||||||||| ||     
T  7426089 tactccctccgtcccacaataactgagccatttgcaaaaaaagtgtcccaaaataactgagccatttcacttttcaatacaatattaattacttttttcc 7425990  T
Q  116 ctt-tataactataattaatactactttcacaacttctaattcaat 160  Q
    ||| ||||||| || |||||||||||||||||||||| ||||||||    
T  7425989 cttatataactctagttaatactactttcacaacttccaattcaat 7425944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 38182035 - 38181940
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||| | |||| ||  ||| ||| ||||||||||| || | ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  38182035 aaaataactgagtcattttacttttcaataaaatattaattatttctttctctttataactctaattaatactactttcacaacttccaattcaat 38181940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 46288640 - 46288497
Alignment:
Q  19 ctccctccgt-ccataataaccgagccatttgcaaaagaag-tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctc 116  Q
    |||||||||| ||| |||||||||| |||||| |||| ||  ||||  |||||||||||   |||||||  ||| ||||||||||||||| |||| || |    
T  46288640 ctccctccgttccacaataaccgagtcatttgtaaaaaaaaatgtcccaaaataactgagccatttcacttttcaatataatattaattaattttttccc 46288541  T
Q  117 tttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||| |||||||||||||||||| |||||  ||||||||    
T  46288540 tttataactctaattaatactactttcataactttcaattcaat 46288497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 12308275 - 12308419
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaag-tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctc 114  Q
    |||||||||||||| | |||||||||| |||||| |||| ||  ||||  ||||||||||| | ||||||   ||| ||| |||||||||||||||| ||    
T  12308275 tactccctccgtcccacaataaccgagtcatttgaaaaaaaaaatgtctcaaaataactgagtcatttcaattttcaatacaatattaattacttttttc 12308374  T
Q  115 tctttataactataattaatactactttcacaacttctaattcaat 160  Q
      ||||||||| ||||||||| ||||||||||||||| ||||||||    
T  12308375 a-tttataactctaattaatattactttcacaacttccaattcaat 12308419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 30462908 - 30463041
Alignment:
Q  14 tgctactccctccgtcc-ataataaccgagccatttgcaaaagaag--tgtcataaaataactgaattatttcaccattcgatataatattaattacttt 110  Q
    ||||||||||||||||| |||||||  ||| ||||||||||| ||   ||||||||||||| ||| | |||||||  ||| ||| ||||||||| |||||    
T  30462908 tgctactccctccgtcccataataattgagtcatttgcaaaaaaaaaatgtcataaaataattgagtcatttcacttttccatacaatattaatgacttt 30463007  T
Q  111 tctctctttataactataattaatactactttca 144  Q
    | ||  ||||||||| ||||||||| ||||||||    
T  30463008 tttccttttataactctaattaatattactttca 30463041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 11616493 - 11616602
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaactt 150  Q
    |||| |||||||  |||||||||||   |||||||  ||| ||| |||||||||||||||| || |||||||||| |||||||||| |||||||| |||     
T  11616493 aaaacaagtgtcccaaaataactgagccatttcacttttcaatacaatattaattacttttttccctttataactctaattaatacaactttcaccactc 11616592  T
Q  151 ctaattcaat 160  Q
    | ||||||||    
T  11616593 ccaattcaat 11616602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 31581618 - 31581525
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| |||| || |||||||||||| | |||||||  ||| ||| |||||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  31581618 aaaaaaagtatcctaaaataactgagtcatttcacttttcaatacaatattaattacttttttccatttataactctaattaatactactttca 31581525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 33584543 - 33584588
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| || |||||||||||||||||||||||||||||    
T  33584543 attaattacttttttccctttataactataattaatactactttca 33584588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 2846888 - 2846758
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| |||||||| ||| ||||| |||  || |||||||  ||||||| ||| | |||||||  ||| ||| |  ||||||||||||| |    
T  2846888 tactccctccgtcccataataactgagtcattttcaataaaaaagtgtcccaaaataagtgagtcatttcacttttcaatacatcattaattactttttt 2846789  T
Q  114 ctctttataactataattaatactactttca 144  Q
    |  ||||||||| ||||||||||||||||||    
T  2846788 ccttttataactctaattaatactactttca 2846758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 34963972 - 34963893
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||| | |||||||  ||| ||| | |||||||||||||| || |||||||||| ||||||||| ||||||||    
T  34963972 aaaataactgagtcatttcacttttcaatacagtattaattacttttttccctttataactctaattaatattactttca 34963893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 39498569 - 39498699
Alignment:
Q  17 tactccctccgt-ccataataaccgagccatttgcaaaagaag--tgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||| |||||||||| ||||| |||| |||| ||   |||||||||||||||||  |||||| |  ||| ||  |||||||||||||||| |    
T  39498569 tactccctccgttccataataactgagccttttgtaaaaaaatattgtcataaaataactgacctatttctcttttcaatgcaatattaattactttttt 39498668  T
Q  114 ctctttataactataattaatactactttca 144  Q
    ||  |||||| | ||||||||| ||||||||    
T  39498669 ctaattataattctaattaatattactttca 39498699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 33774254 - 33774119
Alignment:
Q  16 ctactccctccgtc-cataataaccgagccatttgcaaaagaa--gtgtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    |||||||||||||| || |||||| ||| ||||| ||||| ||  ||||   ||||||||||| | |||||||  ||| ||| ||||||||||| ||||     
T  33774254 ctactccctccgtctcacaataactgagtcatttacaaaaaaaaagtgttccaaaataactgagtcatttcacttttcaatacaatattaattattttt- 33774156  T
Q  113 tctctttataactataattaatactactttcacaactt 150  Q
    || |||||||| | ||||||||||||||||||||||||    
T  33774155 tc-ctttataattctaattaatactactttcacaactt 33774119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 30659607 - 30659546
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||||| ||   |||||||| ||||||||||||||||||| ||||| ||||||||    
T  30659607 attaattacttttttccaattataactctaattaatactactttcaccacttcaaattcaat 30659546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 37264273 - 37264354
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||  ||| ||| ||||||||||||||||  ||  |||||||| ||||||||||||||||||| ||| | ||||||||    
T  37264273 atttcacttttcaatacaatattaattactttttcctaattataactctaattaatactactttcaccactcccaattcaat 37264354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 40590986 - 40590909
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactacttt 142  Q
    ||||||||||| | |||||||  ||  ||| |||||||||||||||| ||  ||||||||| ||||||||||||||||    
T  40590986 aaaataactgagtcatttcacttttaaatacaatattaattacttttttccttttataactctaattaatactacttt 40590909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 23703847 - 23703939
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataa-tattaattacttttctctctttataactataattaatactacttt 142  Q
    |||| |||| ||||||||||||||||| |||| ||  | | ||| || |||||||||||||| ||  ||||||||| ||||||||||||||||    
T  23703847 aaaaaaagtatcataaaataactgaatcattttactttccaatacaattattaattacttttttccatttataactctaattaatactacttt 23703939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 45891006 - 45890919
Alignment:
Q  56 aagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||| |||||||||||   |||||||  ||| ||| |||| |||||| |||| || |||||||||||||||||||| ||||||||    
T  45891006 aagtgtcacaaaataactgagcaatttcacttttcaatacaataataattattttt-tccctttataactataattaatattactttca 45890919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 48981274 - 48981369
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaag--aagtgtcataaaataactgaattatttcaccattcgatataatattaattactt 109  Q
    |||||||||||||| ||||||| |||||| |||||||||   |||||||  ||||||||||| | |||||||  ||| ||| ||||||||||||||    
T  48981274 tactccctccgtcccataataatcgagccgtttgcaaaaataaagtgtcccaaaataactgagtcatttcacttttcaatacaatattaattactt 48981369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 29257442 - 29257572
Alignment:
Q  17 tactccctccgtc-cataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||| |||||| ||||||||| ||| ||||| |||  || |||||||  ||||||| |||  ||||||||  ||| ||| |  ||||||||||||| |    
T  29257442 tactccatccgtctcataataactgagtcattttcaataaaaaagtgtcccaaaataagtgagctatttcacttttcaatacatcattaattactttttt 29257541  T
Q  114 ctctttataactataattaatactactttca 144  Q
    | |||||||||| ||||||||| ||||||||    
T  29257542 ccctttataactctaattaatattactttca 29257572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 37157062 - 37157188
Alignment:
Q  16 ctactccctccgtcc--ataataaccgagccatttgca----aaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattactt 109  Q
    |||||||||||||||  |||||||| ||| ||||||||    ||| ||  ||| ||||||||||||  ||||||||  ||| ||| ||||||||||| ||    
T  37157062 ctactccctccgtccccataataactgagtcatttgcacacaaaaaaaaagtcctaaaataactgagctatttcacttttcaatacaatattaattattt 37157161  T
Q  110 ttctctctttataactataattaatact 137  Q
    || ||| ||||||||| |||||||||||    
T  37157162 ttttct-tttataactctaattaatact 37157188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 9602838 - 9602887
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcac 145  Q
    |||||||||||||||| |||  |||||||  |||||||||||||||||||    
T  9602838 aatattaattacttttttctaattataacactaattaatactactttcac 9602887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 9830409 - 9830458
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcac 145  Q
    |||||||||||||||| |||  |||||||  |||||||||||||||||||    
T  9830409 aatattaattacttttttctaattataacactaattaatactactttcac 9830458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 23111664 - 23111611
Alignment:
Q  92 atataatattaattacttttctctctttataactataattaatactactttcac 145  Q
    |||||||||||||||||||| ||   |||||||  |||||||||||||||||||    
T  23111664 atataatattaattacttttttccaattataacactaattaatactactttcac 23111611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 29434755 - 29434662
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| |||||||  ||||||||||| | ||||| |  | | ||| ||||||||||| ||||  | |||||||||| ||||||||||||||||||    
T  29434755 aaaaaaagtgtctcaaaataactgagtcatttcgctttccaatacaatattaattattttttcccctttataactctaattaatactactttca 29434662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 46095609 - 46095532
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactacttt 142  Q
    |||||||| || | |||||||  ||| ||| ||||||||||| |||| ||  ||||||||| ||||||||||||||||    
T  46095609 aaaataaccgagtcatttcacttttcaatacaatattaattaattttttcattttataactctaattaatactacttt 46095532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 47453964 - 47454029
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||  ||| ||| ||||||||| | |||| || ||||||||||||||||| |||||||||||    
T  47453964 atttcacttttcaatacaatattaatcatttttttccctttataactataattattactactttca 47454029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 32775960 - 32776024
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| ||   |||||||| ||| ||||||||||||||| ||| | ||||||||    
T  32775960 aatattaattacttttttccaattataactctaaataatactactttcaccactcccaattcaat 32776024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 38589711 - 38589775
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| ||   |||||||  ||||||||||||||||||| ||| | ||||||||    
T  38589711 aatattaattacttttttccaattataacactaattaatactactttcaccactcccaattcaat 38589775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 42575851 - 42575705
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaa--gtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| | |||||| |||||||||| |||||||  |||||  |||||||| ||   |||||||  ||| ||| |||||||||||||||| |    
T  42575851 tactccctccgtcccacaataactgagccatttgtaaaagaaaagtgtcccaaaataaccgagccatttcacttttcaatacaatattaattactttttt 42575752  T
Q  114 ctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    | |||||||||| ||||||||||||||||||||||||| ||||||||    
T  42575751 ccctttataactttaattaatactactttcacaacttccaattcaat 42575705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 22583090 - 22582938
Alignment:
Q  12 tttgctactccctccgtcc-ataataaccgagccatttgcaaaagaa---gtgtcataaaataactgaattatttcaccattcgatataatattaattac 107  Q
    |||| |||||||||||||| | ||||||  || ||||||||||| ||   ||||| | |||||||||| ||||||||   ||| ||| |||||||||||     
T  22583090 tttgttactccctccgtcccacaataactaagtcatttgcaaaaaaaaatgtgtccttaaataactgagttatttcaattttcaatacaatattaattat 22582991  T
Q  108 ttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||| | ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  22582990 ttttttttctttataactctaattaatactactttcacaacttccaattcaat 22582938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 35646303 - 35646156
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaa---gtgtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    |||||||||| ||| |||||||| |||| |||||||||| ||   |||||  || |||||||| | |||||||  ||| |||  |||||||||||||||     
T  35646303 tactccctccatcccataataactgagctatttgcaaaaaaaaaagtgtctcaatataactgagtcatttcacttttcaatacgatattaattacttttt 35646204  T
Q  113 tctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  35646203 tccttttataactctaattaatactactttcacaacttctaattcaat 35646156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 39008025 - 39008169
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaag-tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctc 114  Q
    |||||||||||||| | |||||| |||  |||||||||| ||  |||| |||||||||| | | |||||||  ||| ||| ||||||||||| |||| ||    
T  39008025 tactccctccgtcccacaataactgagttatttgcaaaaaaaaatgtcctaaaataactaagtcatttcacttttcaatacaatattaattatttttttc 39008124  T
Q  115 tctttataactataattaatactactttcacaacttctaattcaat 160  Q
     |||||||||| |||||||||||||||||| |||||| ||||||||    
T  39008125 cctttataactctaattaatactactttca-aacttccaattcaat 39008169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 4412328 - 4412424
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||| | | |||||||  ||| ||| |||||||||||||||| || |||||||||| |||||||||||| |||||  | ||||||||||||    
T  4412328 taaaataactaagtcatttcacttttcaatacaatattaattacttttttccctttataactctaattaatactattttcatcatttctaattcaat 4412424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 8369910 - 8369763
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaa--agaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| | |||| | ||||||||||||||  | |||||||  |||||||||||   ||||||   ||| ||| ||||||||||| |||| |    
T  8369910 tactccctccgtcccacaatagctgagccatttgcaaataaaaagtgtcccaaaataactgagccatttcatttttcaatacaatattaattattttttt 8369811  T
Q  114 ctcttt-ataactataattaatactactttcacaacttctaattcaat 160  Q
     ||||| |||||| ||||||||||||||||||||||||  ||||||||    
T  8369810 ttcttttataactctaattaatactactttcacaactttcaattcaat 8369763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 3725082 - 3725211
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| |||||||| ||  |||||||||  || ||||||| |||||||||||| | |||||||  ||| ||| ||||||||||  |||| |    
T  3725082 tactccctccgtcccataataactgaatcatttgcaataaaaaagtgtcctaaaataactgagtcatttcacttttcaatacaatattaatt-ttttttt 3725180  T
Q  114 ctctttataactataattaatactactttca 144  Q
    | |||||||||| ||||||||| ||||||||    
T  3725181 ccctttataactctaattaatattactttca 3725211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 858246 - 858360
Alignment:
Q  30 cataataaccgagccatttgcaaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataa 129  Q
    |||| ||| ||||||||||  |||| || |||  ||||||||| || | |||||||  ||| ||| |||||||||||||||| |  |||||||||| |||    
T  858246 catagtaatcgagccatttaaaaaaaaaatgttctaaaataaccgagtcatttcacatttcaatacaatattaattacttttttacctttataactctaa 858345  T
Q  130 ttaatactactttca 144  Q
    |||||||||||||||    
T  858346 ttaatactactttca 858360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 25814296 - 25814385
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactact 140  Q
    |||| ||||||  |||||||||||||| |||||||  ||| ||| |||||||||||||||| ||  ||||||||| ||||||||| ||||    
T  25814296 aaaaaaagtgttctaaaataactgaatcatttcacttttcaatacaatattaattacttttttccttttataactttaattaatattact 25814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 8692949 - 8692889
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaatt 156  Q
    |||||||||||||||| |  |||||||||| ||||||||| ||||||||||||||| ||||    
T  8692949 aatattaattactttttttcctttataactctaattaatattactttcacaacttccaatt 8692889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 7276282 - 7276389
Alignment:
Q  20 tccctccgtcc-ataataaccgagccatttgcaaaagaagt-gtcataaaataactgaattatttcaccattcgatataatattaattacttttctctct 117  Q
    ||||||||||| | |||||| ||||||||||||||| ||   ||| |||||||||||| |||||| ||  ||| ||| |||||||||||||||| || ||    
T  7276282 tccctccgtcccaaaataactgagccatttgcaaaaaaaaaagtcctaaaataactgagttattttacttttcaatacaatattaattacttttttcact 7276381  T
Q  118 ttataact 125  Q
    ||||||||    
T  7276382 ttataact 7276389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 11099639 - 11099560
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||| | |||||||  | | ||| ||||||||||||||||  | |||||||||| ||||||||||||||||||    
T  11099639 aaaataactgagtcatttcactttccaatacaatattaattactttttcccctttataactctaattaatactactttca 11099560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 33012249 - 33012379
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaag--aagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    ||||| |||||||| |||||||||||| |||||||||||   |||| ||  |||||| ||||   |||||||  ||| ||  |||||||||||||||| |    
T  33012249 tactcactccgtcccataataaccgagtcatttgcaaaaacaaagtatcccaaaatatctgagccatttcacttttcaatgcaatattaattactttttt 33012348  T
Q  114 ctctttataactataattaatactactttca 144  Q
    |||||||||||  || |||||||||||||||    
T  33012349 ctctttataacgctagttaatactactttca 33012379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 4044690 - 4044559
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaag---tgtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    |||||||||||||| |||||||| ||| ||||||||||| ||    ||||  ||||||| ||||| |||||||  ||| ||| ||||||||||||||||     
T  4044690 tactccctccgtcccataataactgagtcatttgcaaaataaaaaatgtcccaaaataattgaatcatttcacttttcaatacaatattaattacttttt 4044591  T
Q  113 tctctttataactataattaatactactttcac 145  Q
    || |||||||| | ||||||||| || ||||||    
T  4044590 tc-ctttataaatttaattaataatattttcac 4044559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 13135685 - 13135794
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaactt 150  Q
    |||| |||||||| |||||||  || | |||||||  ||| ||| |||||||| || |||| || |||||||||| |||||| |||||||||||  |||     
T  13135685 aaaaaaagtgtcaaaaaataatcgagtcatttcacttttcaatacaatattaaatatttttttccctttataactttaattactactactttcatcactc 13135784  T
Q  151 ctaattcaat 160  Q
    ||||||||||    
T  13135785 ctaattcaat 13135794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 15814570 - 15814686
Alignment:
Q  29 ccataataaccgagccatttgca---aaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataact 125  Q
    |||||||||| |||| |||||||   ||| || ||||  ||||||||||| | |||||||  ||| ||| ||||||||||| |||| |||  ||||||||    
T  15814570 ccataataactgagctatttgcacccaaaaaaatgtctcaaaataactgagtcatttcacttttcaatacaatattaattatttttttct--ttataact 15814667  T
Q  126 ataattaatactactttca 144  Q
     ||||||||||||||||||    
T  15814668 ctaattaatactactttca 15814686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 6610729 - 6610862
Alignment:
Q  16 ctactccctccgtcc-ataataaccgagccatttgcaaaagaagt--gtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    ||||||||||||||| |||||||| ||| ||||| ||||| ||    |||  ||||||||||| | |||||||  ||  ||| ||||||||||||||||     
T  6610729 ctactccctccgtcccataataactgagtcattttcaaaaaaaaaaagtcccaaaataactgagtcatttcacttttaaatacaatattaattacttttt 6610828  T
Q  113 t--ctctttataactataattaatactactttca 144  Q
    |  |||||||||||| ||||||||| ||||||||    
T  6610829 tttctctttataactttaattaatattactttca 6610862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 7613684 - 7613730
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactacttt 142  Q
    |||||||||||||||| |  |||||||||||||||||||| ||||||    
T  7613684 aatattaattactttttttcctttataactataattaatattacttt 7613730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 17243081 - 17243037
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||    
T  17243081 attaattactttt-tccctttataactctaattaatactactttca 17243037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 43525477 - 43525518
Alignment:
Q  118 ttataactataattaatactactttcacaacttctaattcaa 159  Q
    |||||||| ||||||||||||||||||| ||||| |||||||    
T  43525477 ttataactctaattaatactactttcaccacttccaattcaa 43525518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 13716987 - 13717035
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| || |||||||||| ||||||||| || |||||    
T  13716987 aatattaattacttttttccctttataactctaattaatattattttca 13717035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 20189869 - 20189917
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||| |||| || |||||||||| ||||||||| ||||||||    
T  20189869 aatattaattatttttttccctttataactctaattaatattactttca 20189917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 3604819 - 3604666
Alignment:
Q  10 tatttgctactccctccgtcc-ataataaccgagccatttgcaaa--agaagtgtcataaaataactgaattatttcaccattcgatataatattaatta 106  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||  | || |||| |||||||||||| | |||||||  ||| ||| |||||||||||    
T  3604819 tatttgttactccctccgtcccacaataacagagccatttgtaaataaaaaatgtcctaaaataactgagtcatttcacttttcaatacaatattaatta 3604720  T
Q  107 cttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
     |||| || |||||||||| ||||||||| ||||||||||||||| ||||||||    
T  3604719 tttttttccctttataactctaattaatattactttcacaacttccaattcaat 3604666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 15081331 - 15081464
Alignment:
Q  29 ccataataaccgagccatttgc--aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataacta 126  Q
    |||||||||| ||| ||| |||  |||| |||||||  ||||||||||||  |||||||  ||| ||| |||||||||||||||| || ||||||||||     
T  15081331 ccataataactgagtcatctgcgaaaaaaaagtgtcccaaaataactgaacaatttcacttttcaatacaatattaattacttttttccctttataactc 15081430  T
Q  127 taattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||||| || ||| ||||||||    
T  15081431 taattaatactactttcataatttccaattcaat 15081464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 4238359 - 4238462
Alignment:
Q  56 aagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaat 155  Q
    ||||||| |||||||| ||| | |||| | | ||| ||| ||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||  |||    
T  4238359 aagtgtcctaaaataattgagtcattttatctttcaatacaatattaattatttttttctctttataactttaattaatactac-ttcacaactttcaat 4238457  T
Q  156 tcaat 160  Q
    |||||    
T  4238458 tcaat 4238462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 26356247 - 26356310
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||||||  ||||||||||||||    
T  26356247 aatattaattactttt-tctcattataactttaattaatactactttcatcacttctaattcaat 26356310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 31265726 - 31265820
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||| | | |||||||  ||| ||| ||||||||||| |||| || |||||||||| ||||||||| ||||||||||||||| ||||||||    
T  31265726 aaaataacttagtcatttcacttttcaatacaatattaattatttttttc-ctttataactctaattaatattactttcacaacttccaattcaat 31265820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 9354575 - 9354509
Alignment:
Q  94 ataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||||| |    |||||||| ||||||||||||||||||||||| ||||||||||    
T  9354575 ataatattaattactttttttcaattataactctaattaatactactttcacaactcctaattcaat 9354509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 30064116 - 30064031
Alignment:
Q  59 tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| |||||||||||| | |||||||  | | ||| |||||||||||||||| || |||||||||| ||||||||| ||||||||    
T  30064116 tgtcctaaaataactgagtcatttcactttccaatacaatattaattacttttttccctttataactctaattaatattactttca 30064031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 33921599 - 33921535
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| ||   |||||||| |||||||||||||||| |||||| | ||||||||    
T  33921599 aatattaattacttttttccaattataactctaattaatactacttttacaactcccaattcaat 33921535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 34803815 - 34803784
Alignment:
Q  118 ttataactataattaatactactttcacaact 149  Q
    ||||||||||||||||||||||||||||||||    
T  34803815 ttataactataattaatactactttcacaact 34803784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 15321372 - 15321307
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||  ||| |||| ||||||||||||||| |||  |||||||  ||||||||||||||||||    
T  15321372 atttcacgtttcaatattatattaattacttttttctaattataacactaattaatactactttca 15321307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 38252651 - 38252520
Alignment:
Q  16 ctactccctccgtcc-ataataaccgagccatttgcaaaagaa--gtgtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    ||||||||||||||| |||||||| ||| ||||||||||| ||  |||||  ||||||||||||  |||||||  || |||| ||||||||||||||||     
T  38252651 ctactccctccgtcccataataactgagtcatttgcaaaaaaaaagtgtcccaaaataactgaaccatttcactttttgatacaatattaattacttttt 38252552  T
Q  113 tctctttataactataattaatactactttca 144  Q
    || |||||||||| |||| |||||||||||||    
T  38252551 tccctttataactctaatcaatactactttca 38252520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 32241599 - 32241492
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaactt 150  Q
    |||| |||| || |||||||| ||| |||||||||  ||| ||| |||||||||||||||| || |||||||||| ||||||||| ||||||||||||||    
T  32241599 aaaaaaagtatcctaaaataaatgagttatttcacttttcaatacaatattaattacttttttccctttataactctaattaatattactttcacaactt 32241500  T
Q  151 ctaattca 158  Q
    | ||||||    
T  32241499 ccaattca 32241492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 33191070 - 33190975
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||| | |||||||  ||| ||| |||||||||||||||| || |||||||||| |||||| |||||||||||||||||| ||||||||    
T  33191070 aaaataactgagtcatttcacttttcaatacaatattaattacttttttccctttataactctaattagtactactttcacaacttccaattcaat 33190975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 5391943 - 5392074
Alignment:
Q  17 tactccctccgt-ccataataaccgagccatttgcaaaagaa--gtgtcataaaataactgaattatttcaccattcgatataatattaattac-ttttc 112  Q
    |||||||||||| ||||||||   ||||||||||||||| ||  |||||  ||||||||||| | |||||||  ||| ||| |||||||||||| ||||     
T  5391943 tactccctccgttccataatatttgagccatttgcaaaaaaaaagtgtctcaaaataactgagtcatttcacttttcaatacaatattaattactttttt 5392042  T
Q  113 tctctttataactataattaatactactttca 144  Q
    || |||||||||| ||||||||||||||||||    
T  5392043 tccctttataactctaattaatactactttca 5392074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 2119611 - 2119755
Alignment:
Q  17 tactccctccgt-ccataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||| |||||||||| ||| |||||| ||  || |||||||  |||||||||||  ||||||||  ||| ||| ||||||||||| | || |    
T  2119611 tactccctccgttccataataactgagtcatttgtaattaaaaagtgtcccaaaataactgagctatttcacatttcaatacaatattaattattatttt 2119710  T
Q  114 ctctttataactataattaatactactttcacaacttctaattca 158  Q
      |||||||||| ||||||||  || |||||||||||||||||||    
T  2119711 tcctttataactctaattaatcttattttcacaacttctaattca 2119755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 33925214 - 33925150
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||  ||||||||    
T  33925214 aatattaattacttttttccttttataactctaattaatactactttcacaactttcaattcaat 33925150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 29615744 - 29615823
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| |||| ||  ||| ||| ||||||||||| |||| || |||||||||| ||||||||||||||||||    
T  29615744 aaaataactgaatcattttacttttcaatacaatattaattatttttttccctttataactttaattaatactactttca 29615823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 39171489 - 39171568
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||| | |||| ||  ||| |||||||||||||||||||| ||| ||||||||| |||||||||||| |||||    
T  39171489 aaaataactgagtcatttaacttttcaatataatattaattacttttttctttttataactctaattaatactattttca 39171568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 28791288 - 28791349
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||||||||   |||||||| ||||||||||||||||||||||| | ||||||||    
T  28791288 attaattacttttctccaattataactctaattaatactactttcacaactcccaattcaat 28791349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 44615578 - 44615447
Alignment:
Q  17 tactccctccgtc-cataataaccgagccatttgcaaaagaagt---gtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    ||||||||||||| ||||||||||||| || |||||||| ||     ||  |||||||||||| | |||||||  | | ||| |||||||||||||||||    
T  44615578 tactccctccgtctcataataaccgagtcaattgcaaaaaaaaaaaagttctaaaataactgagtcatttcactttccaatacaatattaattacttttc 44615479  T
Q  113 tctctttataactataattaatactactttca 144  Q
     | |||||||||| ||||||||| || |||||    
T  44615478 cccctttataactctaattaatattattttca 44615447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 31132706 - 31132761
Alignment:
Q  96 aatattaattacttttctctct-ttataactataattaatactactttcacaactt 150  Q
    |||||||||||||||| |  || |||||||| ||||||||||||||||||||||||    
T  31132706 aatattaattactttttttcctcttataactctaattaatactactttcacaactt 31132761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 14689920 - 14690001
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||  ||| ||| |||||||||||||||| ||   |||||||  ||||||||||||||||||| ||| | ||||||||    
T  14689920 atttcacttttcaatacaatattaattacttttttccaattataacactaattaatactactttcaccactcccaattcaat 14690001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 31410770 - 31410690
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctctt-tataactataattaatactactttca 144  Q
    |||||||||||| | |||||||  | | ||| |||||||||||||||| || ||| ||||||| ||||||||||||||||||    
T  31410770 taaaataactgagtcatttcactttccaatacaatattaattactttt-tcccttctataactttaattaatactactttca 31410690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 41726481 - 41726562
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||  ||| ||| |||||||||||||||| |    |||||||| |||||||||||| |||||||||| | ||||||||    
T  41726481 atttcacttttcaatacaatattaattactttttttcaattataactgtaattaatactaatttcacaactcccaattcaat 41726562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 33746348 - 33746301
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||| |||| || ||||||||||||||||||||||| |||||    
T  33746348 aatattaattatttttttc-ctttataactataattaatactattttca 33746301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 18849920 - 18849825
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||| | |||||||  ||| ||| |||||||||||||||| || |||||||||| ||||||||| ||||||||||||||| ||||||||    
T  18849920 aaaataactgagtcatttcacttttcaataaaatattaattacttttttccctttataactctaattaatattactttcacaacttccaattcaat 18849825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 44020923 - 44020828
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||| ||||| |||| ||  ||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||  | ||||||||||||    
T  44020923 aaaataattgaatcattttacttttcgatacaatattaattacttttttctctttataactctaatcaatactactttcatcatttctaattcaat 44020828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 48740416 - 48740543
Alignment:
Q  17 tactccctccgtc-cataataaccgagccatttgcaaaagaag-tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctc 114  Q
    ||||||||||||| ||||||||| ||| ||||||||||| ||  ||||  ||||||||||| | |||||||  ||| | | |||||||||||||||| ||    
T  48740416 tactccctccgtctcataataactgagtcatttgcaaaaaaaaatgtctcaaaataactgagtcatttcacttttcaaaacaatattaattacttttttc 48740515  T
Q  115 tctttataactataattaatactacttt 142  Q
     |||||||||| ||||||||| ||||||    
T  48740516 cctttataactctaattaatattacttt 48740543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 54729644 - 54729565
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| |||||||  | | ||| |||||||||||||||| || |||||||||| ||||||||||||||||||    
T  54729644 aaaataactgaatcatttcactttccaatacaatattaattacttttttccctttataactctaattaatactactttca 54729565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 31862772 - 31862830
Alignment:
Q  97 atattaattacttttctctctttataactataattaatactactttcacaacttctaat 155  Q
    |||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||    
T  31862772 atattaattatttttttccctttataactctaattaatactactttcacaacttctaat 31862830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 42024412 - 42024267
Alignment:
Q  18 actccctccgtcc-ataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctc 114  Q
    ||||||||||||| |||||||| ||| ||||| |||  || ||||||| ||| |||| ||| | |||||||  ||| ||| |  |||||||| |||| ||    
T  42024412 actccctccgtcccataataactgagtcattttcaataaaaaagtgtcctaagataaatgagtcatttcacttttcaatacatcattaattatttttttc 42024313  T
Q  115 tctttataactataattaatactactttcacaacttctaattcaat 160  Q
     |||||||||||||||||||||||||||||  ||||| ||||||||    
T  42024312 cctttataactataattaatactactttcatcacttccaattcaat 42024267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 29644266 - 29644380
Alignment:
Q  31 ataataaccgagccatttgcaaaagaagt-gtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataa 129  Q
    |||||||| ||| ||||||||||| || | |||  |||||||||||   |||||||  ||| ||| ||||||||| |||||| ||  |||||||||||||    
T  29644266 ataataactgagtcatttgcaaaaaaaattgtcccaaaataactgagacatttcacttttcaatacaatattaataacttttttccttttataactataa 29644365  T
Q  130 ttaatactactttca 144  Q
    |||||||||||||||    
T  29644366 ttaatactactttca 29644380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 25149431 - 25149492
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||||| ||   |||||||| ||||||||||||||||||||||||| ||||||||    
T  25149431 attaattacttttttccaattataactctaattaatactactttcacaacttccaattcaat 25149492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 1825410 - 1825330
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||| | |||||||  ||| ||||||||||||||| |||| ||| ||||||||| ||||||||| || |||||    
T  1825410 taaaataactgagtcatttcacttttcaatataatattaattatttttttctttttataactctaattaatattattttca 1825330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 38976968 - 38977016
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||||    
T  38976968 aatattaattacttttttccctttataactctaattaatactactttca 38977016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 39979725 - 39979805
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||| ||| |||||||||  ||| ||| ||||||||||||||||  | |||||||||| ||||||||| ||||||||    
T  39979725 taaaataattgagttatttcacttttcaatacaatattaattactttttcccctttataactctaattaatattactttca 39979805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 41203652 - 41203760
Alignment:
Q  35 taaccgagccatttgcaaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattac-ttttctctctttataactataattaa 133  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| | |||||||   || ||| |||||||||||| |||| ||  ||||||||| |||||||    
T  41203652 taaccgagtcatttgcaaaaaaaatgtcacaaactaactgagtcatttcacttatcaatacaatattaattactttttttcattttataactctaattaa 41203751  T
Q  134 tactacttt 142  Q
    |||||||||    
T  41203752 tactacttt 41203760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 42544108 - 42544232
Alignment:
Q  20 tccctccgtc-cataataaccgagccatttgcaaaagaa-gtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctct 117  Q
    |||||||||| ||||||||| ||||||||| ||||| || |||||||||||||| ||| | |||||||  ||| ||| |  ||||| ||||||| |  ||    
T  42544108 tccctccgtctcataataactgagccattttcaaaaaaaagtgtcataaaataaatgagtcatttcacttttcaatacatcattaactactttttttcct 42544207  T
Q  118 ttataactataattaatactacttt 142  Q
    |||||||| ||||||||| ||||||    
T  42544208 ttataactctaattaatattacttt 42544232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 49812175 - 49812254
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||| | |||||||  ||| ||| ||||||||||| |||| || |||||||||| |||||||||||| |||||    
T  49812175 aaaataactgagtcatttcacttttcaatacaatattaattatttttttccctttataactctaattaatactattttca 49812254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 4354428 - 4354478
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaact 149  Q
    |||||||| |||||||   ||||||||||||||||||||||||||||||||    
T  4354428 attaattatttttctccaattataactataattaatactactttcacaact 4354478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 8294963 - 8295056
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| |||||||  |||||||| || | |||||||  ||| ||| |||||||||||| ||| || |||||||||| ||||| ||||||||||||    
T  8294963 aaaaaaagtgtcccaaaataaccgagtcatttcacttttcaatacaatattaattacctttttccctttataactctaatttatactactttca 8295056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 35998279 - 35998198
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattact-tttctctctttataactataattaatactactttcac 145  Q
    ||||||| ||| | |||||||  ||||||| ||||||||||| | ||| || |||||||||| |||||||||||||||||||    
T  35998279 aaaataattgagtcatttcacttttcgatacaatattaattattatttttccctttataactctaattaatactactttcac 35998198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 22496811 - 22496759
Alignment:
Q  92 atataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||||| ||||  | |||||||||| ||||||||||||||||||    
T  22496811 atataatattaattattttttcccctttataactctaattaatactactttca 22496759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 42670517 - 42670437
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaa 159  Q
    |||||||| ||| ||| |||||||||||| ||| |  |||||||||| ||||||||| |||||||| || ||| |||||||    
T  42670517 atttcacctttcaatacaatattaattacattttttcctttataactttaattaatattactttcataatttccaattcaa 42670437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 41710356 - 41710226
Alignment:
Q  17 tactccctccgtc-cataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||| |||||| ||||||||| ||| ||||| |||  || |||||||  ||||||| |||  ||||||||  ||| ||| |  ||||||||||||| |    
T  41710356 tactccatccgtctcataataactgagtcattttcaataaaaaagtgtcccaaaataagtgagctatttcacttttcaatacatcattaattactttttt 41710257  T
Q  114 ctctttataactataattaatactactttca 144  Q
    | |||||||||| ||||||||| ||||||||    
T  41710256 ccctttataactctaattaatattactttca 41710226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 49448784 - 49448866
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctct--ttataactataattaatactactttca 144  Q
    ||||||||||||   |||||||  ||| |||||||||||||||||||| | | |  |||||||| ||||||||||||||||||    
T  49448784 taaaataactgatccatttcacttttcaatataatattaattacttttttttttaattataactctaattaatactactttca 49448866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 1796350 - 1796308
Alignment:
Q  118 ttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||    
T  1796350 ttataactctaatttatactactttcacaacttccaattcaat 1796308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 10099833 - 10099791
Alignment:
Q  118 ttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||| ||||||||||||||||||||||| | ||||||||    
T  10099833 ttataactctaattaatactactttcacaactcccaattcaat 10099791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 29550835 - 29550793
Alignment:
Q  118 ttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||| ||||||||||||||||||||||| | ||||||||    
T  29550835 ttataactctaattaatactactttcacaactcccaattcaat 29550793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 34020943 - 34021051
Alignment:
Q  29 ccataataaccgagccatttgc--aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataacta 126  Q
    |||||||||||||| |||||||  |||| || ||||  ||||||| ||| | |||||||  ||| ||| ||||| ||||| |||| || ||||||||||     
T  34020943 ccataataaccgagtcatttgcaaaaaaaaaatgtctcaaaataagtgagtcatttcacttttcaatacaatataaattatttttttccctttataactc 34021042  T
Q  127 taattaata 135  Q
    |||||||||    
T  34021043 taattaata 34021051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 41436441 - 41436506
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||  ||| ||| ||||||||||| |||| |||  |||||||| ||||||||||||||||||    
T  41436441 atttcacttttcaatacaatattaattatttttttctaattataactctaattaatactactttca 41436506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 42185923 - 42185878
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  42185923 attaattacttttttccatttataactctaattaatactactttca 42185878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 49306567 - 49306628
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||| |||| |  |||||||||| ||||||||||||||||||  ||| ||||||||||    
T  49306567 attaattattttttttcctttataactctaattaatactactttcatcactcctaattcaat 49306628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 3685956 - 3686036
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||| | |||||||  | | ||| ||||||||||| ||||  | |||||||||| ||||||||| ||||||||    
T  3685956 taaaataactgagtcatttcactttccaatacaatattaattattttttcccctttataactctaattaatattactttca 3686036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 25581434 - 25581382
Alignment:
Q  92 atataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||||||| | |  |||||||| ||||||||| ||||||||    
T  25581434 atataatattaattacttttttttaattataactctaattaatattactttca 25581382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 39053114 - 39052982
Alignment:
Q  17 tactccctccgt-ccataataaccgagccatttgcaaaagaag----tgtcataaaataactgaattatttcaccattcgatataatattaattactttt 111  Q
    |||||||||||| |||||||||| ||| ||||| ||||| ||     ||||| ||||||| |||   |||||||  ||| |||||||||||| || ||||    
T  39053114 tactccctccgttccataataactgagtcatttacaaaaaaaaaaaatgtcacaaaataattgagccatttcacttttcaatataatattaactattttt 39053015  T
Q  112 ctctctttataactataattaatactactttcac 145  Q
      || ||||||||| |||||||||||||||||||    
T  39053014 tcct-tttataactctaattaatactactttcac 39052982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 42132790 - 42132854
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| ||   |||||||  ||||||||| ||||||||| ||||| ||||||||    
T  42132790 aatattaattacttttttccaattataacactaattaatattactttcaccacttccaattcaat 42132854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 47787977 - 47787929
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| |   ||||||||| ||||||||||||||||||    
T  47787977 aatattaattactttttttcttttataactctaattaatactactttca 47787929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 21296663 - 21296569
Alignment:
Q  66 aaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||| | |||||||  ||| ||| |||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||| ||||||||    
T  21296663 aaataactgagtcatttcacttttcaatacaatattaattacttttttccttttataactctaattaatactactttcacaacttccaattcaat 21296569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 33994553 - 33994682
Alignment:
Q  17 tactccctccgtcca-taataaccgagccatttgca-aaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctc 114  Q
    ||||||||||||| | ||||||| |||||||||||| ||| || ||||  ||||||||||| | |||||||  ||| ||| |||||||| || |||| ||    
T  33994553 tactccctccgtcaaataataactgagccatttgcacaaaaaaatgtccaaaaataactgagtcatttcacttttcaatacaatattaaatatttttttc 33994652  T
Q  115 tctttataactataattaatactactttca 144  Q
     |||||||||| |||||||||| |||||||    
T  33994653 cctttataactctaattaataccactttca 33994682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 54122398 - 54122290
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaactt 150  Q
    |||| |||||||  ||||||||| | | |||||||  ||| |||||| ||||||||||||| ||  ||||||||| |||| |||||||||||||||||||    
T  54122398 aaaaaaagtgtcccaaaataacttagtcatttcacttttcaatataa-attaattacttttttccttttataactctaatcaatactactttcacaactt 54122300  T
Q  151 ctaattcaat 160  Q
    | ||||||||    
T  54122299 ccaattcaat 54122290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 53051003 - 53051067
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||||||   |||||||| ||||||||||||||||||||||| | ||||||||    
T  53051003 aatattaattacttttctccaattataactctaattaatactactttcacaactcccaattcaat 53051067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 38601017 - 38600888
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaag--tgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| |||||||| ||| ||||||||||| ||   |||  |||||||| ||| | |||||||| ||| ||| ||||||||||||| || |    
T  38601017 tactccctccgtcccataataactgagtcatttgcaaaaaaaaattgttctaaaataattgagtcatttcacctttcaatacaatattaattactctt-t 38600919  T
Q  114 ctctttataactataattaatactactttca 144  Q
    |  ||||||||| ||||||||||||||||||    
T  38600918 ccatttataactctaattaatactactttca 38600888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 39365229 - 39365099
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgc--aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||||||||||| |||||||| ||||||||| |  |||| |||||||  |||||||||||   ||||||   ||| ||| ||||||||||||||||      
T  39365229 tactccctccgtcccataataactgagccatttaccaaaaaaaagtgtcccaaaataactgagccatttcaattttcaatacaatattaattactttttc 39365130  T
Q  114 ctctttataactataattaatactactttca 144  Q
    | |||||||||| |||||||||||| |||||    
T  39365129 ccctttataactctaattaatactattttca 39365099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 43639629 - 43639582
Alignment:
Q  113 tctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  43639629 tctctttataactctaattaatactactttcacaacttccaattcaat 43639582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 46786142 - 46786063
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||  ||||||||  ||  |||||||||||||||||||| || |||||||||| || |||||||||||||||    
T  46786142 aaaataactgagctatttcactttttaatataatattaattacttttttcgctttataactttagttaatactactttca 46786063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 51164844 - 51164993
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaa-----gtgtcataaaataactgaattatttcaccattcgatataatattaattacttt 110  Q
    |||||||||||||| ||||||||  |||||||||||||| ||     |||| |||||||||  || | |||||||  ||| ||| |||||||||||||||    
T  51164844 tactccctccgtcccataataactcagccatttgcaaaaaaaaaaaagtgttataaaataatcgagtcatttcacttttcaatacaatattaattacttt 51164943  T
Q  111 tctctctttataactataattaa-tactactttcacaacttctaattcaat 160  Q
    | || |||||||||| ||||||| |||||||||||| ||| | ||||||||    
T  51164944 t-tccctttataactctaattaagtactactttcactactccaaattcaat 51164993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 41031504 - 41031597
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| |||||||  ||||||| ||| | |||||||  ||| ||| |||||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  41031504 aaaaaaagtgtcgcaaaataattgagtcatttcacttttcaatacaatattaattacttttttccatttataactttaattaatactactttca 41031597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 1334910 - 1334847
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||||| ||| | ||||||||    
T  1334910 aatattaattacttttttc-ctttataactctaattaatactactttcaccactcccaattcaat 1334847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 48744202 - 48744250
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  48744202 aatattaattacttttttctctttataactctaattaatattactttca 48744250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 54493885 - 54493933
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||||    
T  54493885 aatattaattacttttttccctttataactctaattaatactactttca 54493933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 54845683 - 54845582
Alignment:
Q  61 tcataaaataactgaattatttcaccattcgatataatattaattac--ttttctctctttataactataattaatactactttcacaacttctaattca 158  Q
    ||||||||||||| | | |||||||  ||  ||| |||||||||||   |||| ||| ||||||||| ||||||||||||||||||  ||||||||||||    
T  54845683 tcataaaataactaagtcatttcactttttaatacaatattaattatatttttttctatttataactctaattaatactactttcattacttctaattca 54845584  T
Q  159 at 160  Q
    ||    
T  54845583 at 54845582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 32023312 - 32023183
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaagaagt-gtcataaaataactgaattatttcaccattcgatataatattaattacttttctc 114  Q
    |||||||| ||||| |||||||| ||| || |||||||| ||   ||| |||||||||||| | |||||||  | | ||| ||||||||||| |||| ||    
T  32023312 tactcccttcgtcccataataactgagtcaattgcaaaaaaaaaagtcctaaaataactgagtcatttcactttccaatacaatattaattatttttttc 32023213  T
Q  115 tctttataactataattaatactactttca 144  Q
     |||||||||| ||||||||| ||||||||    
T  32023212 cctttataactctaattaatattactttca 32023183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 54021604 - 54021524
Alignment:
Q  79 atttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||  ||| ||||||||||||||| |||| || |||||||| | ||||||||||||||||||| ||| | ||||||||    
T  54021604 atttcacttttcaatataatattaattaatttt-tccctttataattctaattaatactactttcaccactccgaattcaat 54021524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 32977917 - 32977867
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaact 149  Q
    |||||||| |||||||   |||||||| |||||||||||||||||||||||    
T  32977917 attaattatttttctccaattataactctaattaatactactttcacaact 32977867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 8706088 - 8706173
Alignment:
Q  59 tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| ||||| ||||||  | ||||||  ||| ||| |||||| ||||||||| |||  |||||||| ||||||||||||||||||    
T  8706088 tgtcctaaaaaaactgacatgtttcacttttcaatacaatattgattacttttttctaattataactctaattaatactactttca 8706173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 9057975 - 9058060
Alignment:
Q  59 tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| ||||| ||||||  | ||||||  ||| ||| |||||| ||||||||| |||  |||||||| ||||||||||||||||||    
T  9057975 tgtcctaaaaaaactgacatgtttcacttttcaatacaatattgattacttttttctaattataactctaattaatactactttca 9058060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 50736101 - 50736142
Alignment:
Q  119 tataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||    
T  50736101 tataactctaattaatactactttcactacttccaattcaat 50736142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 50776754 - 50776713
Alignment:
Q  119 tataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||    
T  50776754 tataactctaattaatactactttcactacttccaattcaat 50776713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 1923067 - 1923131
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| ||   |||||||  ||||||||||||||||||| ||| | ||||||||    
T  1923067 aatattaattacttttttccaattataacactaattaatactactttcaccactcccaattcaat 1923131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 16134533 - 16134486
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| || |||||||| | ||||||||||||||||||    
T  16134533 aatattaattacttttttc-ctttataattctaattaatactactttca 16134486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 21585623 - 21585476
Alignment:
Q  16 ctactccctccgt-ccataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttc 112  Q
    |||||| |||||| |||||||||| ||| ||||| |||  || |||||||  ||||||||||| | |||||||  | | ||| ||||||||||| ||||     
T  21585623 ctactctctccgttccataataactgagtcattttcaataaaaaagtgtcccaaaataactgagtcatttcactttccaatacaatattaattatttttt 21585524  T
Q  113 tctctttataactataattaatactactttcacaacttctaattcaat 160  Q
     |   |||||||| ||||||||| ||||||||| ||||| ||| ||||    
T  21585523 cccaattataactctaattaatattactttcaccacttccaatacaat 21585476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 32827414 - 32827370
Alignment:
Q  116 ctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||| ||||||||||||||||||  | ||||||||||||    
T  32827414 ctttataactctaattaatactactttcatcatttctaattcaat 32827370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 39866683 - 39866635
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||||||  | |||||||||| |||||||||| |||||||    
T  39866683 aatattaattactttttcccctttataactctaattaataccactttca 39866635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 44219163 - 44219099
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| ||   |||||||| |||||||||||| |||||  ||||| ||||||||    
T  44219163 aatattaattacttttttccaattataactctaattaatactattttcattacttccaattcaat 44219099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 48409564 - 48409624
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaacttctaattcaa 159  Q
    ||||||||||||| ||   |||||||| ||||||||||||||||||| ||| | |||||||    
T  48409564 attaattacttttttccaattataactctaattaatactactttcaccactcccaattcaa 48409624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 2219659 - 2219515
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaaaag-aagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctc 114  Q
    ||||||||| |||| ||||||| ||| ||||||||||||  || ||||  ||||||| ||||  |||||||  ||| ||| |||||||||||||||| ||    
T  2219659 tactccctcagtcccataataatcgaaccatttgcaaaaataattgtcccaaaataattgaaccatttcacttttcaatacaatattaattactttt-tc 2219561  T
Q  115 tctttataactataattaatactactttcacaacttctaattcaat 160  Q
     |||||||||| ||||||||||||| ||||||||||| ||||||||    
T  2219560 cctttataactctaattaatactacgttcacaacttccaattcaat 2219515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 5442287 - 5442381
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||  ||||||||  ||| |||||| ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||| ||||||||    
T  5442287 aaaataactgagctatttcacttttcaatataa-attaattacttttttccttttataactataattaatattactttcacaacttccaattcaat 5442381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 36784260 - 36784355
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||| | |||||||  ||| ||| |||||||||||||||| |   ||||||||||||||||||| || |||||||||||| ||||||||    
T  36784260 aaaataactgagtcatttcacttttcaatacaatattaattactttttttcatttataactataattaatattattttcacaacttcaaattcaat 36784355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 27698744 - 27698837
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| ||||||| |||||||| ||| | |||||||  ||| ||| |||||||||||||||| || |||||||||| ||||||||| ||||||||    
T  27698744 aaaaaaagtgtcctaaaataattgagtcatttcacttttcaatacaatattaattacttttttccctttataactctaattaatattactttca 27698837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 11426082 - 11425936
Alignment:
Q  17 tactccctccgtcc-ataataaccgagccatttgcaa--aagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttct 113  Q
    |||||| ||||||| |||||| | ||||||||| |||  || ||||||| |||||||||||| | |||||||  | | ||| |||||||||||||||| |    
T  11426082 tactccttccgtcccataataccggagccattttcaataaaaaagtgtcctaaaataactgagtcatttcactttccaatacaatattaattactttttt 11425983  T
Q  114 ctctttataactataattaatactactttcacaacttctaattcaat 160  Q
        |||||||| ||||||||||||||||||| ||||| ||| ||||    
T  11425982 tcaattataactttaattaatactactttcactacttccaatacaat 11425936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 19533081 - 19533002
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||| | |||| ||  ||| ||| |||||||||||||||| || |||||||||| ||||||||||||||||||    
T  19533081 aaaataactgagtcattttacttttcaatacaatattaattacttttttccctttataactttaattaatactactttca 19533002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 48242790 - 48242675
Alignment:
Q  28 tccataataaccgagccatttgcaaaagaagtgtca-taaaataactgaattatttcaccattcgatataatattaattacttttctctctttataacta 126  Q
    ||||||||||||||||||||||||||| || |  |  | |||||||| | | |||||||  ||| ||| |||||||||||||||| ||| |||||||||     
T  48242790 tccataataaccgagccatttgcaaaaaaaattgctctgaaataacttagtcatttcacttttcaatacaatattaattacttttttctttttataactt 48242691  T
Q  127 taattaatactacttt 142  Q
    ||||||||| ||||||    
T  48242690 taattaatattacttt 48242675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 49494363 - 49494230
Alignment:
Q  28 tccataataaccgagccatttgcaaaag--aagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataact 125  Q
    |||||||||| ||||||||||||||||   |||||||  |||||||  || | |||||||  ||| ||| | |||||||||||||| || ||||||||||    
T  49494363 tccataataatcgagccatttgcaaaaataaagtgtctcaaaataatcgagtcatttcacttttcaatacactattaattacttttttc-ctttataact 49494265  T
Q  126 ataattaatactactttcacaacttctaattcaat 160  Q
     ||||||||| ||||||||  | ||||||||||||    
T  49494264 ttaattaatattactttcatcatttctaattcaat 49494230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 17342765 - 17342851
Alignment:
Q  56 aagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactacttt 142  Q
    |||||||  ||||||||||| |||||||||  ||| ||| ||||||||||||| || | || |||||||| ||||||||||||||||    
T  17342765 aagtgtctcaaaataactgagttatttcacttttcaatacaatattaattactattttttcattataactctaattaatactacttt 17342851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 11324180 - 11324273
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| ||||| | |||||||||||||| |||||||  ||| ||| |  ||||| ||||||| || |||||||||||||||||||||||| ||||    
T  11324180 aaaaaaagtgccttaaaataactgaatcatttcacttttcaatacatcattaactacttttttccctttataactataattaatactacattca 11324273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 11482201 - 11482294
Alignment:
Q  51 aaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||| ||||| | |||||||||||||| |||||||  ||| ||| |  ||||| ||||||| || |||||||||||||||||||||||| ||||    
T  11482201 aaaaaaagtgccttaaaataactgaatcatttcacttttcaatacatcattaactacttttttccctttataactataattaatactacattca 11482294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 28277169 - 28277121
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  28277169 aatattaattacttttttctctttataactctaattaataccactttca 28277121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 30749732 - 30749780
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||    
T  30749732 aatattaattacttttttctctttataactctagttaatactactttca 30749780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 30771183 - 30771231
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||    
T  30771183 aatattaattacttttttctctttataactctagttaatactactttca 30771231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 46536277 - 46536365
Alignment:
Q  56 aagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||  ||||||||||| | |||||||  ||| ||| |||||||||||| ||| || || ||||||| ||||||||||||||||||    
T  46536277 aagtgtctcaaaataactgagtcatttcacttttcaatacaatattaattacatttttccctctataactctaattaatactactttca 46536365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 52830576 - 52830496
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||| | |||||||  ||| ||| |||||||||||||||| ||||||||||| | |||||| || ||||||||    
T  52830576 taaaataactgagtcatttcacttttcaatacaatattaattacttttttctctttataattttaattagtattactttca 52830496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 7787646 - 7787696
Alignment:
Q  88 ttcgatataatattaattacttttctctctttataactataattaatacta 138  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||||||||    
T  7787646 ttcgatacaatattaattactttttcccctttataactataattaatacta 7787696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 8327697 - 8327742
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||    
T  8327697 attaattacttttttccctttataactctaattaatactactttca 8327742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 49944731 - 49944807
Alignment:
Q  59 tgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatac 136  Q
    |||| ||||||||| || | |||||||| ||| ||| |||||||||||||||| ||| ||||||||| ||||||||||    
T  49944731 tgtcttaaaataaccgagtcatttcacctttcaatacaatattaattacttttttct-tttataactctaattaatac 49944807  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 28839321 - 28839364
Alignment:
Q  100 ttaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  28839321 ttaattactttt-tccctttataactataattaatactactttca 28839364  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 34877252 - 34877173
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||| |||| ||  ||| ||| |||||||||||||||| |||| |||||||| ||||||||| || |||||    
T  34877252 taaaataactgaatcattttacttttcaatacaatattaattactttt-tctcattataactctaattaatattattttca 34877173  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 38664378 - 38664426
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||| |||| ||| ||||||||| ||||||||||||||||||    
T  38664378 aatattaattatttttttctttttataactctaattaatactactttca 38664426  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 7785433 - 7785359
Alignment:
Q  67 aataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactacttt 142  Q
    ||||||||| | |||||||  ||| ||| ||||||||||| |||| || |||||||||| ||||||||||||||||    
T  7785433 aataactgagtcatttcacttttcaatacaatattaattattttt-tccctttataactctaattaatactacttt 7785359  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 10370349 - 10370270
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||  ||||||||  | | ||| ||||||||||| |||| || |||||||||| ||||||||| ||||||||    
T  10370349 aaaataactgagctatttcactttccaatacaatattaattatttttttccctttataactctaattaatattactttca 10370270  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 16451611 - 16451661
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaact 149  Q
    ||||||||||||| ||   |||||||| |||||||||||||||||||||||    
T  16451611 attaattacttttttccaattataactttaattaatactactttcacaact 16451661  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 16460764 - 16460814
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaact 149  Q
    ||||||||||||| ||   |||||||| |||||||||||||||||||||||    
T  16460764 attaattacttttttccaattataactttaattaatactactttcacaact 16460814  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 3555683 - 3555638
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  3555683 attaattacttttttccttttataactctaattaatactactttca 3555638  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 7075512 - 7075471
Alignment:
Q  118 ttataactataattaatactactttcacaacttctaattcaa 159  Q
    |||||||| ||||||||||||||||||||||| | |||||||    
T  7075512 ttataactctaattaatactactttcacaactccgaattcaa 7075471  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 12267759 - 12267698
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||||| ||   |||||||| || |||||||||||||||||||| | ||||||||    
T  12267759 attaattacttttttccaattataactctagttaatactactttcacaactcccaattcaat 12267698  T

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Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 36232917 - 36232856
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||||| ||   |||||||| ||||||||||||||||||| | ||| ||||||||    
T  36232917 attaattacttttttccaattataactctaattaatactactttcaccatttccaattcaat 36232856  T

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Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 36467391 - 36467278
Alignment:
Q  32 taataaccgagccatttgcaaaagaa-gtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataat 130  Q
    ||||||| ||| ||||||||||| || ||||   ||||| ||||| | |||||||  ||| ||| ||||||||||||||||  | ||||||||||  |||    
T  36467391 taataactgagtcatttgcaaaaaaaagtgtttcaaaatgactgagtcatttcacttttcaatacaatattaattactttttcccctttataactcaaat 36467292  T
Q  131 taatactactttca 144  Q
    |||||||| |||||    
T  36467291 taatactattttca 36467278  T

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Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 45049040 - 45049073
Alignment:
Q  127 taattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||||||||||||||| ||||||||||    
T  45049040 taattaatactactttcacaactcctaattcaat 45049073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 45889376 - 45889331
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  45889376 attaattacttttttccttttataactctaattaatactactttca 45889331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 4466285 - 4466221
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||| |||| ||   |||||||| ||||||||||||||||||| ||||| ||| ||||    
T  4466285 aatattaattatttttttccaattataactctaattaatactactttcaccacttccaatacaat 4466221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 10587712 - 10587664
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| |||  |||||||  ||||||||||||||||||    
T  10587712 aatattaattacttttttctaattataacactaattaatactactttca 10587664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 24131531 - 24131467
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| ||   |||||||  ||||||||||||||||||| ||| | ||||||||    
T  24131531 aatattaattacttttttccaattataacactaattaatactactttcaccactcccaattcaat 24131467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 51049486 - 51049549
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| | | ||||||| |  |||||||||||||||||||||| | ||||||||    
T  51049486 aatattaattactttttt-tatttataatttaaattaatactactttcacaactcccaattcaat 51049549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 52432289 - 52432353
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    |||||||||||||||| |   ||||||||| ||||||||  ||||||||||||||  ||||||||    
T  52432289 aatattaattactttttttcttttataactctaattaatgttactttcacaacttacaattcaat 52432353  T

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Target: scaffold0006 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 229749 - 229864
Alignment:
Q  44 catttgcaaaagaagtgtcataaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttc 143  Q
    ||||||||||| || ||||  |||||||| || |||||||||  ||| ||| ||||||||||| ||||  | |||||||||| |||||||||||||||||    
T  229749 catttgcaaaaaaaatgtcccaaaataacagagttatttcact-ttcaatacaatattaattattttttcccctttataactctaattaatactactttc 229847  T
Q  144 acaacttctaattcaat 160  Q
    |||||||| ||||||||    
T  229848 acaacttccaattcaat 229864  T

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Target: scaffold0007 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 230203 - 230297
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcacaacttctaattcaat 160  Q
    ||||||||||| | |||||||  ||| ||| ||||||||||| |||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||    
T  230203 aaaataactgagtcatttcacttttcaatacaatattaattatttttttct-tttataactctaattaatattactttcacaacttccaattcaat 230297  T

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Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 9710 - 9631
Alignment:
Q  65 aaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||| || | |||||||  ||| ||| ||||||||||||| || || |||||||||| ||||||||||||||||||    
T  9710 aaaataacagagtaatttcacttttcaatacaatattaattactattttccctttataactctaattaatactactttca 9631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 394758 - 394803
Alignment:
Q  99 attaattacttttctctctttataactataattaatactactttca 144  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||    
T  394758 attaattacttttttccctttataactctaattaatactactttca 394803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 14433 - 14481
Alignment:
Q  96 aatattaattacttttctctctttataactataattaatactactttca 144  Q
    |||||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  14433 aatattaattacttttttccttttataactctaattaatactactttca 14481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 5764 - 5844
Alignment:
Q  64 taaaataactgaattatttcaccattcgatataatattaattacttttctctctttataactataattaatactactttcac 145  Q
    |||||||| |||||||||| |   ||| ||| ||||||||||| |||| ||  ||||||||| |||||||||||||||||||    
T  5764 taaaataattgaattattttatttttcaataaaatattaattattttt-tccatttataactttaattaatactactttcac 5844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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