View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-54 (Length: 85)
Name: Solexa-NF5855-54
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-54 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 26482472 - 26482554
Alignment:
| Q |
3 |
agaaaaatcaagttacgtcagaaacaagtaaggaagacctaaatgaaagtgaaaagaaccattacaagaaatttaaaagaata |
85 |
Q |
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| T |
26482472 |
agaaaaatcaagttacgtcagaaataggtaaggaagacctaaatgaaagtgaaaagaaccattacaagaaatttaaaagaata |
26482554 |
T |
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Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 28875350 - 28875307
Alignment:
| Q |
5 |
aaaaatcaagttacgtcagaaacaagtaaggaagacctaaatga |
48 |
Q |
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| T |
28875350 |
aaaaatcaagttacatcataaataagtaaggaacacctaaatga |
28875307 |
T |
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Target: chr1 (Bit Score: 50; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 44731185 - 44731104
Alignment:
| Q |
1 |
agagaaaaatcaagttacgtcagaaacaagtaaggaagacctaaatgaaagtgaaaagaaccattacaagaaatttaaaaga |
82 |
Q |
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| T |
44731185 |
agagaaaaatcaagttacatcagaaacagataaggaatacctgaatgaaagtaaaaagaactattacgagaaatttaaaaga |
44731104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 134419 - 134341
Alignment:
| Q |
1 |
agagaaaaatcaagttacgtcagaaacaagtaaggaagacctaaatgaaagtgaaaagaaccattacaagaaatttaaa |
79 |
Q |
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| T |
134419 |
agagaaaaatcaagttacatcagaaacatgtaagggatacctggatgaaaataagaagaatcattacaagaaatttaaa |
134341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 38597322 - 38597244
Alignment:
| Q |
1 |
agagaaaaatcaagttacgtcagaaacaagtaaggaagacctaaatgaaagtgaaaagaaccattacaagaaatttaaa |
79 |
Q |
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|||||||||||||||||| ||| ||||| |||||| | |||| |||||| | | ||||| |||||||||||||||||| |
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| T |
38597322 |
agagaaaaatcaagttacatcataaacaggtaagggacacctggatgaaaataagaagaatcattacaagaaatttaaa |
38597244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21082562 - 21082490
Alignment:
| Q |
1 |
agagaaaaatcaagttacgtcagaaacaagtaaggaagacctaaatgaaagtgaaaagaaccattacaagaaa |
73 |
Q |
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|||||||||||||||||| ||||||| | ||||||| | || ||||||| | ||||||| |||||||||||| |
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| T |
21082562 |
agagaaaaatcaagttacatcagaaatagataaggaacatctgaatgaaaataaaaagaaacattacaagaaa |
21082490 |
T |
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