View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-8 (Length: 147)
Name: Solexa-NF5855-8
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 4e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 4e-73
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 8636680 - 8636534
Alignment:
| Q |
1 |
aaaaatgaaacccaccaccaatgttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagt |
100 |
Q |
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| T |
8636680 |
aaaaatgaaacccaccaccaaagttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagt |
8636581 |
T |
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| Q |
101 |
aattatgagtgagtctaatactccaaacccaagtcaacaacatcaca |
147 |
Q |
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| T |
8636580 |
aattatgagtgagtctaatactccaaacccaagtcaacaaaatcaca |
8636534 |
T |
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Target: chr7 (Bit Score: 75; Significance: 7e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 48617482 - 48617620
Alignment:
| Q |
1 |
aaaaatgaaacccaccaccaatgttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagt |
100 |
Q |
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||||| ||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||||| || |||||||||||||| || || ||||| |||| |
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| T |
48617482 |
aaaaaggaagcccaccaccaatgttttccatattgttgaatcatatcagtgaaacgccaatcttcccttgcaccccattgccacttctctcgtctgaagt |
48617581 |
T |
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| Q |
101 |
aattatgagtgagtctaatactccaaacccaagtcaaca |
139 |
Q |
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| T |
48617582 |
agttgtggatgagtctaatactccacacccaagtcaaca |
48617620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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