View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5856-1 (Length: 189)
Name: Solexa-NF5856-1
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5856-1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 7e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 7e-94
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 42193432 - 42193251
Alignment:
| Q |
8 |
tctttaatacaagaaaaatcacagaacactaggctgccaaacttgagtgcttaattataaagctttgttttatcaaaccaaacaagcacttagtgctctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193432 |
tctttaatacaagaaaaatcacagaacactaggctgccaaacttgagtgcttaattataaagctttgttttatcaaaccaaacaagcacttagtgctctt |
42193333 |
T |
|
| Q |
108 |
cgtttgtgttggaaacaaaaaactcattcaggtttcacttcgtagacatctttagtgcttcacttcccaaatagtttagatc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193332 |
tgtttgtgttggaaacaaaaaactcattcatgtttcacttcgtagacatctttagtgcttcacttcccaaatagtttagatc |
42193251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 48113750 - 48113822
Alignment:
| Q |
114 |
tgttggaaacaaaaaactcattcaggtttcac-ttcgtagacatctttagtgcttcacttcccaaatagttta |
185 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||| ||| | ||| |||||| |||| |||||||||||||||||| |
|
|
| T |
48113750 |
tgttggaaacaaaaaactaattaatgtttcactttcctggacctctttaatgctccacttcccaaatagttta |
48113822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University