View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5856-11 (Length: 127)
Name: Solexa-NF5856-11
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5856-11 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 5e-57; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 37399171 - 37399286
Alignment:
| Q |
8 |
atataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctctaa |
107 |
Q |
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| T |
37399171 |
atataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctcgaa |
37399270 |
T |
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| Q |
108 |
atggggtcctttttta |
123 |
Q |
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| T |
37399271 |
atggggtcctttttta |
37399286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 37380694 - 37380810
Alignment:
| Q |
8 |
atataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctctaa |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||| ||| ||||||| ||||||||||| ||||| |
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| T |
37380694 |
atataaatacctagagtgtaatggattggtacatacaacatcatca---actaaaaaagaaagaatattgataatagagtataagtctaagtcgttctaa |
37380790 |
T |
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| Q |
108 |
atggggtccttttttacctt |
127 |
Q |
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|||||||||||||||||||| |
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| T |
37380791 |
atggggtccttttttacctt |
37380810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 37441744 - 37441678
Alignment:
| Q |
8 |
atataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattg |
77 |
Q |
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| T |
37441744 |
atataaataactacagtttaatggattggtacatacataatcctc---aagtaaaaaagaaagaatattg |
37441678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 37534889 - 37534795
Alignment:
| Q |
32 |
attggtacatacaaaatcat--cataaagtaaaaaagaaataatattggtaagagagtatt-agtctaagtcgctctaaatggggtcctttttta |
123 |
Q |
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| T |
37534889 |
attggtacatccaaaatcatatcataaaggaaaaaggaaataatactgagaagagagtattaagtgtaagtttctctaaatgggatcctttttta |
37534795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 37825715 - 37825592
Alignment:
| Q |
7 |
aatataaataactagagtgtaatggattggtacatacaaaatcat--cataaagtaaaaaagaaataatattggtaagagagtatta-gtctaagtcgct |
103 |
Q |
| |
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||||||| ||| ||||| | ||| ||| |||||| ||||||||| ||||||| ||||| |||| |||| || |||||||||||| || ||||| || |
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| T |
37825715 |
aatataactaaatagagggaaatcaattagtacatccaaaatcatatcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttct |
37825616 |
T |
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| Q |
104 |
ctaaatggggtccttttttacctt |
127 |
Q |
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||||||||| |||||||||||||| |
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| T |
37825615 |
ctaaatgggatccttttttacctt |
37825592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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