View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5856-2 (Length: 179)
Name: Solexa-NF5856-2
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5856-2 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 28986318 - 28986148
Alignment:
| Q |
8 |
caaacacaatcaaccctcaagacaaacctccttaaaacccacggcggcggtctcgacattgccgcctatggctccgcaatccaacactgcaccaaccacc |
107 |
Q |
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| T |
28986318 |
caaacacaatcaaccctcaagacaaacctccttaaaacccacggcggcggtctcgacatcgccgcctatggctccgcaatccaacactgcaccaaccacc |
28986219 |
T |
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| Q |
108 |
gtctcatccgtcagggaaagcagcttcacgctcgcttcttcccattcgccatcacacctgacaatttcatc |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28986218 |
gtctcatccgtcagggaaagcagcttcacgctcgcttcttcccattcgccatcacacctgacaatttcatc |
28986148 |
T |
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