View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5856-5 (Length: 148)
Name: Solexa-NF5856-5
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5856-5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 9e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 27572833 - 27572694
Alignment:
| Q |
9 |
aaagaggatgaaagatgtttgtggaagaagaccatattgatgggtaagaaatgccaaccaatgcaattttcaggtgcaattttttatgatgacgagggga |
108 |
Q |
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| T |
27572833 |
aaagaggatgaaagatgtttgtggaagaagaccatattgatgggtaagaaatgccaaccaatgtaatttccaggtgcaattttttatgatgacaagggga |
27572734 |
T |
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| Q |
109 |
acagacttttggagccactacgctccaaaacaaataaacc |
148 |
Q |
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| T |
27572733 |
acagactttttgagccaccacgctccaaaacaaataaacc |
27572694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 27743522 - 27743661
Alignment:
| Q |
9 |
aaagaggatgaaagatgtttgtggaagaagaccatattgatgggtaagaaatgccaaccaatgcaattttcaggtgcaattttttatgatgacgagggga |
108 |
Q |
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| T |
27743522 |
aaagaggatgaaagatgtttgtggaagaagaccatattgatgggtgagaaatgcgaaccaatgcaatttccaggtgcaattttttatgatgacaagggga |
27743621 |
T |
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| Q |
109 |
acagacttttggagccactacgctccaaaacaaataaacc |
148 |
Q |
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| T |
27743622 |
atagacttttggagccaccacgctccaaaacaaataaacc |
27743661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 42103715 - 42103786
Alignment:
| Q |
27 |
ttgtggaagaagaccatattgatgggtaagaaatgccaaccaatgcaattttcaggtgcaattttttatgat |
98 |
Q |
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| T |
42103715 |
ttgtggaagaagaccatactgatgggggaaaaatgtcaaccattggaatttccaggtgcaattttttatgat |
42103786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 29189332 - 29189252
Alignment:
| Q |
10 |
aagaggatgaaagatgtttgtggaagaagaccatattgatgggtaagaaatgccaaccaatgcaattttcaggtgcaattt |
90 |
Q |
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| T |
29189332 |
aagaggatgacgaatgcttgtggaagaagaccatattgatgggggagagatgtcaaccattggtattttcaggtgcaattt |
29189252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 13150934 - 13151069
Alignment:
| Q |
9 |
aaagaggatgaaagatgtttgtggaagaagaccatattgatgggtaagaaatgccaaccaatgcaattttcaggtgcaattttttatgatgacgagggga |
108 |
Q |
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| T |
13150934 |
aaagaggatgaaagatgtttatggaagaagaccatattgatgggtgagaaatgccaaccaatgcaatttccaggtgcaattttttatgatgacaagggga |
13151033 |
T |
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| Q |
109 |
acagacttttggagccactacgctccaaaacaaata |
144 |
Q |
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| T |
13151034 |
atagactttttgagccaccacgctccaaaacaaata |
13151069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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