View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5856-7 (Length: 144)
Name: Solexa-NF5856-7
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5856-7 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 48446528 - 48446391
Alignment:
| Q |
7 |
agagccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcata |
106 |
Q |
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| T |
48446528 |
agagccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcata |
48446429 |
T |
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| Q |
107 |
atatattttacaaatttgaactcgtattctgtgcctat |
144 |
Q |
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| T |
48446428 |
atatattttacaaatttgaactcgtattctgtgcctat |
48446391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 13464520 - 13464655
Alignment:
| Q |
7 |
agagccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcata |
106 |
Q |
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| T |
13464520 |
agagccccttgagcatgaagatagtttcagcgacatttggtacttttcaaggcaggtactcttaattgtcatggtttctagtacgtttgaatgctgcata |
13464619 |
T |
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| Q |
107 |
atatattttacaaatttgaactcgtattctgtgcct |
142 |
Q |
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| T |
13464620 |
atatattttgcaaattcaaactcatattttgtgcct |
13464655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 14349648 - 14349782
Alignment:
| Q |
7 |
agagccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcata |
106 |
Q |
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| T |
14349648 |
agagccccttgagcatgaagatagtttcagcgacatttggtacttttcaaggcaggtactcttaattgtcatggtttctagtacttttgaatgctgcata |
14349747 |
T |
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| Q |
107 |
atatattttacaaatttgaactcgtattctgtgcc |
141 |
Q |
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| T |
14349748 |
atatattttgcaaattcaaactcatattttgtgcc |
14349782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 7174840 - 7174898
Alignment:
| Q |
70 |
aattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatttgaact |
128 |
Q |
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| T |
7174840 |
aattgccatggtctctagtacattagcattctgcataatatattttgcaaatttgaact |
7174898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 38489970 - 38490101
Alignment:
| Q |
11 |
ccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataatat |
110 |
Q |
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| T |
38489970 |
ccccttatgtatgaatataatttcactaacacttggtccttttcaaggcagtttctctgaattttcatggtctctagtacctttgaatggtgcataatat |
38490069 |
T |
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| Q |
111 |
attttacaaatttgaactcgtattctgtgcct |
142 |
Q |
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| T |
38490070 |
attctgcaaaatcgaactcatgttttgtgcct |
38490101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 43099368 - 43099309
Alignment:
| Q |
63 |
tactctgaattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatt |
122 |
Q |
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| T |
43099368 |
tactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt |
43099309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 47367730 - 47367781
Alignment:
| Q |
70 |
aattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaat |
121 |
Q |
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| T |
47367730 |
aattgtcatggtctctagtacttttgaatgttgcacaatatattttgcaaat |
47367781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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