View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5858-1 (Length: 309)
Name: Solexa-NF5858-1
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5858-1 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 1079463 - 1079760
Alignment:
| Q |
8 |
tcaaattgtgtaaaatcaaatttaagaccgactcaaccatatcccccgaccatattgaccttaggttcccacacctaacaaagtttgaggctataaactg |
107 |
Q |
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| T |
1079463 |
tcaaattgtgtaaaatcaaatttaagaccgactcaaccatatcccccgaccatattgaccttaggttcccacacctaacaaagtttgaggctataaactg |
1079562 |
T |
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| Q |
108 |
ctcttggtttcttgattctggagcggtctatgtacatgcgcctctacttcaaagcataaacattaaaaatggcagttgcttgttgtatggagaggacaac |
207 |
Q |
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| T |
1079563 |
ctcttggtttcttgattctggagcggtctatgtacatgcgcctctacttcaaagcataaacattaaaaatggcagttgcttgttgtatggagaggacaac |
1079662 |
T |
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| Q |
208 |
tctgctatcaattttgtaagttcgttgcatctgcaagaattcacttttgcgggttattgtataccacaaggcattataataccgctcccatgttatgc |
305 |
Q |
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| T |
1079663 |
tctgctatcaattttgtaagttctttgcatctgcaagaattcacttttgcaggttattgtataccacaaggcattataataccgttcccatattatgc |
1079760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 5132341 - 5132046
Alignment:
| Q |
10 |
aaattgtgtaaaatcaaatttaagaccgactcaaccatatcccccgaccatattgaccttaggttcccacacctaacaaagtttgaggctataaactgct |
109 |
Q |
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| T |
5132341 |
aaattgtatcaaatcaaatttaagaccgactcaaccatatcccccgaccatattgaccttaggttcccacacctaacaaagtttgaggctataaactgct |
5132242 |
T |
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| Q |
110 |
cttggtttcttgattctggagcggtctatgtacatgcgcctctacttcaaagcataaacattaaaaatggcagttgcttgttgtatggagaggacaactc |
209 |
Q |
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| T |
5132241 |
cttggtttcttgattctagagcggtctatgtacacgcgcctctacttcaaagcataaacattaaaaatggcacttgcttgttgtatggagaggacaactc |
5132142 |
T |
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| Q |
210 |
tgctatcaattttgtaagttcgttgcatctgcaagaattcacttttgcgggttattgtataccacaaggcattataataccgctcccatgttatgc |
305 |
Q |
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| T |
5132141 |
tgctatcaattttgtaagttctttgcatctgcaaggattcacttttgcgggttattgtataccacaaggcattataataccgttcccatgttatgc |
5132046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 13018338 - 13018569
Alignment:
| Q |
22 |
atcaaatttaagaccgactcaaccatatcccccgaccatattgaccttaggttcccacacctaacaaagtttgaggctataaactgctcttggtttcttg |
121 |
Q |
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||||| ||||| ||||||||| ||| |||| | ||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
13018338 |
atcaactttaacaccgactcacccacatcctgcaaccatattgaccttacattcccacacctaataaattttgaggctaaaaactgctcttggtttcttg |
13018437 |
T |
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| Q |
122 |
attctggagcggtctatgtacatgcgcctctacttcaaagcataaacattaaaaatggcagttgcttgttgtatggagaggacaactctgctatcaattt |
221 |
Q |
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| T |
13018438 |
attctagaacggtctttgtacatgcacctctacttcaaagcattctcattctaaatggcatgcacatgttgtatggagaggacaactctgctatcaattt |
13018537 |
T |
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| Q |
222 |
tgtaagttcgttgcatctgcaagaattcactt |
253 |
Q |
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||||||||| | |||||||||||||||||||| |
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| T |
13018538 |
tgtaagttcttcgcatctgcaagaattcactt |
13018569 |
T |
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