View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5858-10 (Length: 142)

Name: Solexa-NF5858-10
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5858-10
Solexa-NF5858-10
[»] chr4 (7 HSPs)
chr4 (5-138)||(14173944-14174077)
chr4 (5-138)||(14178698-14178831)
chr4 (5-138)||(28607031-28607164)
chr4 (5-138)||(28611793-28611926)
chr4 (9-138)||(44161597-44161726)
chr4 (6-138)||(11104477-11104609)
chr4 (60-138)||(48826922-48827000)
[»] chr8 (2 HSPs)
chr8 (5-138)||(12930683-12930816)
chr8 (5-138)||(12935429-12935562)
[»] chr1 (1 HSPs)
chr1 (5-138)||(34907146-34907279)
[»] chr7 (4 HSPs)
chr7 (5-138)||(37040651-37040784)
chr7 (9-123)||(15290243-15290354)
chr7 (4-101)||(12082021-12082117)
chr7 (59-142)||(12099060-12099143)
[»] chr5 (2 HSPs)
chr5 (6-138)||(42911214-42911346)
chr5 (14-133)||(29107104-29107224)
[»] chr3 (1 HSPs)
chr3 (5-138)||(51302168-51302301)
[»] chr2 (1 HSPs)
chr2 (5-123)||(8539190-8539308)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 1e-60; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 14173944 - 14174077
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  14173944 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattaga 14174043  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
    ||||||||||||||||||||  ||||||||||||    
T  14174044 atagaagtaggtctcacgggaaacactatattgt 14174077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 14178698 - 14178831
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  14178698 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattaga 14178797  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
    ||||||||||||||||||||  ||||||||||||    
T  14178798 atagaagtaggtctcacgggaaacactatattgt 14178831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 28607164 - 28607031
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  28607164 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattaga 28607065  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
    ||||||||||||||||||||  ||||||||||||    
T  28607064 atagaagtaggtctcacgggaaacactatattgt 28607031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 28611926 - 28611793
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  28611926 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattaga 28611827  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
    ||||||||||||||||||||  ||||||||||||    
T  28611826 atagaagtaggtctcacgggaaacactatattgt 28611793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 44161597 - 44161726
Alignment:
Q  9 aatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagtatag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  44161597 aatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatag 44161696  T
Q  109 aagtaggtctcacgggccacactatattgt 138  Q
    |||||||||| |||||  ||||||||||||    
T  44161697 aagtaggtcttacgggaaacactatattgt 44161726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 11104477 - 11104609
Alignment:
Q  6 aaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagta 105  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| | |    
T  11104477 aaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaa 11104576  T
Q  106 tagaagtaggtctcacgggccacactatattgt 138  Q
    ||| ||| |||||||||||  ||||||||||||    
T  11104577 taggagtgggtctcacgggaaacactatattgt 11104609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 48827000 - 48826922
Alignment:
Q  60 tatcatctctataacttctaggtgctataatataatagcattagtatagaagtaggtctcacgggccacactatattgt 138  Q
    |||||||||||||||||||||||||||||| |||||||||||   |||| |||   |||||||||  ||||||||||||    
T  48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgt 48826922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 3e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 12930683 - 12930816
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  12930683 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattaga 12930782  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
    ||| ||||||||||||||||  ||||||||||||    
T  12930783 ataaaagtaggtctcacgggaaacactatattgt 12930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 12935429 - 12935562
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  12935429 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattaga 12935528  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
     || ||||||||||||||||  ||||||||||||    
T  12935529 gtaaaagtaggtctcacgggaaacactatattgt 12935562  T

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Target: chr1 (Bit Score: 114; Significance: 3e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 34907146 - 34907279
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  34907146 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattaga 34907245  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
    ||| ||||||||||||||||  ||||||||||||    
T  34907246 ataaaagtaggtctcacgggaaacactatattgt 34907279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 8e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 37040784 - 37040651
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  37040784 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattaga 37040685  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
    |||||||||||||||||||   ||||||||||||    
T  37040684 atagaagtaggtctcacggaaaacactatattgt 37040651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 15290243 - 15290354
Alignment:
Q  9 aatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagtatag 108  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||| | ||||    
T  15290243 aatagagtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgc--tgaaataatagcattcgaatag 15290339  T
Q  109 aagtaggtctcacgg 123  Q
     ||| ||||||||||    
T  15290340 gagtgggtctcacgg 15290354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 12082021 - 12082117
Alignment:
Q  4 agaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcatt 101  Q
    |||||| |||||||||| ||||||||||| |  | |||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| ||||    
T  12082021 agaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatt 12082117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 12099060 - 12099143
Alignment:
Q  59 gtatcatctctataacttctaggtgctataatataatagcattagtatagaagtaggtctcacgggccacactatattgtgtct 142  Q
    |||||||||||||||||| |||||| ||||| |||||| |||| | |||| |||  |||||||  |  |||| |||||||||||    
T  12099060 gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtct 12099143  T

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Target: chr5 (Bit Score: 101; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 42911346 - 42911214
Alignment:
Q  6 aaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagta 105  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |    
T  42911346 aaaaatagagtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaa 42911247  T
Q  106 tagaagtaggtctcacgggccacactatattgt 138  Q
    ||||||||||||||| |||  ||||||||||||    
T  42911246 tagaagtaggtctcaagggaaacactatattgt 42911214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 29107224 - 29107104
Alignment:
Q  14 agtgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagtatagaagt 112  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||| || ||||||||||||| ||||||||    
T  29107224 agtgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagt 29107125  T
Q  113 aggtctcacgggccacactat 133  Q
    ||||||||||||  |||||||    
T  29107124 aggtctcacgggaaacactat 29107104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 51302168 - 51302301
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |     
T  51302168 gaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcga 51302267  T
Q  105 atagaagtaggtctcacgggccacactatattgt 138  Q
    |||| ||| |||||||||||  ||||||||||||    
T  51302268 ataggagtgggtctcacgggaaacactatattgt 51302301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 8539190 - 8539308
Alignment:
Q  5 gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagt 104  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |     
T  8539190 gaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcga 8539289  T
Q  105 atagaagtaggtctcacgg 123  Q
    |||| ||| ||||||||||    
T  8539290 ataggagtgggtctcacgg 8539308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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