View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5858-11 (Length: 140)
Name: Solexa-NF5858-11
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5858-11 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18049517 - 18049646
Alignment:
| Q |
4 |
ggcaagggtaccattatggaaaattaagcctcatcatcacaaagaagcatgtaagtaactttttgtaggagaagcatttatgtaacttatatctatagaa |
103 |
Q |
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| T |
18049517 |
ggcaagggtaccattatggaaaattaagcctcatcatcacaaagaagcatgtaagtaactttttgtaggagaagcatttatgtaacttatatctatagaa |
18049616 |
T |
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| Q |
104 |
ttattttaccattaaaattgttcatggttt |
133 |
Q |
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| T |
18049617 |
ttatgtttccattaaaattgtgcatggttt |
18049646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 4395809 - 4395680
Alignment:
| Q |
4 |
ggcaagggtaccattatggaaaattaagcctcatcatcacaaagaagcatgtaagtaactttttgtaggagaagcatttatgtaacttatatctatagaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4395809 |
ggcaagggtaccattatggaaaattaagcctcatcatcacaaagaagcatgtaagtaactttttgtaggagaagcatttatgtaacttatatctatagaa |
4395710 |
T |
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| Q |
104 |
ttattttaccattaaaattgttcatggttt |
133 |
Q |
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|||| || ||||||||||||| |||||||| |
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| T |
4395709 |
ttatgtttccattaaaattgtgcatggttt |
4395680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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