View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5858-12 (Length: 138)
Name: Solexa-NF5858-12
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5858-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 9e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 9e-68
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 5131897 - 5132034
Alignment:
| Q |
1 |
agatatcgtttttaagaaagctaaatcatacacttaccccggatacctgaaatctgatttgttttgcattactgaattggctgagaaggccaaaaattga |
100 |
Q |
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| T |
5131897 |
agatatcgtttttaagaaagctaaatcatacacttaccccggatacgtgaaatctgatttgttttgcattactgaattggctgagaaggccaaaaattga |
5131996 |
T |
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| Q |
101 |
gtgatctggcgaataaacttgacccttttctatagcga |
138 |
Q |
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| T |
5131997 |
gtgatctggcgaataaactggacccttttctatagcga |
5132034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 1079909 - 1079773
Alignment:
| Q |
1 |
agatatcgtttttaagaaagctaaatcatacacttaccccggatacctgaaatctgatttgttttgcattactgaattggctgagaaggccaaaaattga |
100 |
Q |
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| T |
1079909 |
agatatcgtttttaagaaagctaaatcatacacttaccccgaatacctgaaatctgatttgctttgcattactgaattggctaagaaggccaaaaattga |
1079810 |
T |
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| Q |
101 |
gtgatctggcgaataaacttgacccttttctatagcg |
137 |
Q |
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| T |
1079809 |
gtgatttggtgaataaactggacccttttctatagcg |
1079773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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