View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5858-16 (Length: 127)
Name: Solexa-NF5858-16
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5858-16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 5e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 34527620 - 34527740
Alignment:
| Q |
7 |
ataaaatacatccaagaagaataaaattgatatatcagagagaacctaacttcatttctaaggtaccaacatagagaaagaacaggttcacacacataaa |
106 |
Q |
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| T |
34527620 |
ataaaatacatccaagaagaataaaattgatatatcagagagaacctaacttcatttctaaggtaccaacatacagaaagaacaggttcacacacataaa |
34527719 |
T |
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| Q |
107 |
gaaagattattaaaatcaaat |
127 |
Q |
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| T |
34527720 |
gaaagattattaaaatcaaat |
34527740 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 27633827 - 27633863
Alignment:
| Q |
7 |
ataaaatacatccaagaagaataaaattgatatatca |
43 |
Q |
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| T |
27633827 |
ataaaatacatccaagaagaacaaaattgatatatca |
27633863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 34518645 - 34518681
Alignment:
| Q |
7 |
ataaaatacatccaagaagaataaaattgatatatca |
43 |
Q |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
34518645 |
ataaaatacatccaagaagaacaaaattgatatatca |
34518681 |
T |
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