View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5858-17 (Length: 127)
Name: Solexa-NF5858-17
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5858-17 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 18050026 - 18049907
Alignment:
| Q |
8 |
ggtctacacataaattttgcaaatttaagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaaacaaattagacataaata |
107 |
Q |
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| T |
18050026 |
ggtctacacataaattttgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaaacaaattagacataaata |
18049927 |
T |
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| Q |
108 |
attaaaactagtaaaaataa |
127 |
Q |
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|||||||||||||||||||| |
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| T |
18049926 |
attaaaactagtaaaaataa |
18049907 |
T |
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Target: chr3 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 4395300 - 4395419
Alignment:
| Q |
8 |
ggtctacacataaattttgcaaatttaagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaaacaaattagacataaata |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4395300 |
ggtctacacataaattttgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaaacaaattagacataaata |
4395399 |
T |
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| Q |
108 |
attaaaactagtaaaaataa |
127 |
Q |
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|||||||||||||||||||| |
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| T |
4395400 |
attaaaactagtaaaaataa |
4395419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 32502957 - 32502856
Alignment:
| Q |
26 |
gcaaatttaagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaaacaaattagacataaataattaaaactagtaaaaat |
125 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32502957 |
gcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaaacaaattagacataaataattaaaactgataaaaat |
32502858 |
T |
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| Q |
126 |
aa |
127 |
Q |
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|| |
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| T |
32502857 |
aa |
32502856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 22891071 - 22891018
Alignment:
| Q |
40 |
cacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaaacaa |
93 |
Q |
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|||| ||||||||| |||||||||||||||| || ||||||||||||||||||| |
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| T |
22891071 |
cacatcatcaaaatcatgatttgtgaattgtgcagcagatgtagaaagaaacaa |
22891018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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