View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5858-2 (Length: 292)

Name: Solexa-NF5858-2
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5858-2
Solexa-NF5858-2
[»] chr7 (7 HSPs)
chr7 (8-289)||(32016356-32016641)
chr7 (249-285)||(27720467-27720503)
chr7 (249-278)||(6518104-6518133)
chr7 (247-280)||(23747400-23747433)
chr7 (249-285)||(3250027-3250063)
chr7 (249-289)||(7982293-7982333)
chr7 (249-285)||(24672798-24672834)
[»] chr1 (1 HSPs)
chr1 (250-286)||(24808440-24808476)
[»] chr8 (1 HSPs)
chr8 (249-287)||(16900876-16900914)
[»] chr4 (2 HSPs)
chr4 (255-289)||(18986938-18986972)
chr4 (250-282)||(680126-680158)
[»] chr2 (2 HSPs)
chr2 (249-287)||(1813559-1813597)
chr2 (250-278)||(41947075-41947103)
[»] chr6 (4 HSPs)
chr6 (260-289)||(20808912-20808941)
chr6 (250-287)||(29165917-29165954)
chr6 (250-278)||(27708106-27708134)
chr6 (250-278)||(27727932-27727960)
[»] scaffold0349 (1 HSPs)
scaffold0349 (250-278)||(6511-6539)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 32016641 - 32016356
Alignment:
Q  8 attcaaaccatcctctaaaattaacaacccctccaacaccttgtacactgagcttaccgaaatgactccatcatcctcaaatctcaacttccacctgtcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016641 attcaaaccatcctctaaaattaacaacccctccaacaccttgtacattgagcttaccgaaatgactccatcatcctcaaatctcaacttccacctgtcc 32016542  T
Q  108 tcctcatgagacaccctccaatccccaatcctaaccataaggttagt----aactcctcctcccaagagaaaaggtttctgcgccaagtaaggacccaat 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  32016541 tcctcatgagacaccctccaatccccaatcctaaccataaggttagtaactaactcctcctcccaagcgaaaaggtttctacgccaagtaaggacccaat 32016442  T
Q  204 tccgatacaagagtcctcttgacttgaagtcagtgttgtcaacgggtagcagaatttgaacaaaccactattttccgtgatctgtg 289  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016441 tccaatacaagagtcctcttgacttgaagtaagtgttgtcaacgggtagcagaatttgaacaaaccactattttccgtgatctgtg 32016356  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 27720467 - 27720503
Alignment:
Q  249 gtagcagaatttgaacaaaccactattttccgtgatc 285  Q
    ||||||||||||||||||||||||||||||| |||||    
T  27720467 gtagcagaatttgaacaaaccactattttccatgatc 27720503  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 6518133 - 6518104
Alignment:
Q  249 gtagcagaatttgaacaaaccactattttc 278  Q
    ||||||||||||||||||||||||||||||    
T  6518133 gtagcagaatttgaacaaaccactattttc 6518104  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 23747400 - 23747433
Alignment:
Q  247 gggtagcagaatttgaacaaaccactattttccg 280  Q
    |||||||||||||| |||||||||||||||||||    
T  23747400 gggtagcagaatttaaacaaaccactattttccg 23747433  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 3250063 - 3250027
Alignment:
Q  249 gtagcagaatttgaacaaaccactattttccgtgatc 285  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  3250063 gtagcagaatttgaagaaaccactattttctgtgatc 3250027  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 7982333 - 7982293
Alignment:
Q  249 gtagcagaatttgaacaaaccactattttccgtgatctgtg 289  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  7982333 gtagcggagtttgaacaaaccactattttacgtgatctgtg 7982293  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 24672834 - 24672798
Alignment:
Q  249 gtagcagaatttgaacaaaccactattttccgtgatc 285  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  24672834 gtagcagaatttgaacaaaccgctattttccatgatc 24672798  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 24808440 - 24808476
Alignment:
Q  250 tagcagaatttgaacaaaccactattttccgtgatct 286  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24808440 tagcagaatttgaacaaaccactgttttccgtgatct 24808476  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 16900914 - 16900876
Alignment:
Q  249 gtagcagaatttgaacaaaccactattttccgtgatctg 287  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  16900914 gtagcagaatttgagcaaaccgctattttccgtgatctg 16900876  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 18986972 - 18986938
Alignment:
Q  255 gaatttgaacaaaccactattttccgtgatctgtg 289  Q
    ||||||||||||||||||| |||||||||||||||    
T  18986972 gaatttgaacaaaccactactttccgtgatctgtg 18986938  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 680158 - 680126
Alignment:
Q  250 tagcagaatttgaacaaaccactattttccgtg 282  Q
    ||||||||||||||||||| |||||||||||||    
T  680158 tagcagaatttgaacaaacaactattttccgtg 680126  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 1813559 - 1813597
Alignment:
Q  249 gtagcagaatttgaacaaaccactattttccgtgatctg 287  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  1813559 gtagcggaatttgaacaaaccattattttccgtgatctg 1813597  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 41947103 - 41947075
Alignment:
Q  250 tagcagaatttgaacaaaccactattttc 278  Q
    |||||||||||||||||||||||||||||    
T  41947103 tagcagaatttgaacaaaccactattttc 41947075  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 289
Target Start/End: Original strand, 20808912 - 20808941
Alignment:
Q  260 tgaacaaaccactattttccgtgatctgtg 289  Q
    ||||||||||||||||||||||||||||||    
T  20808912 tgaacaaaccactattttccgtgatctgtg 20808941  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 29165917 - 29165954
Alignment:
Q  250 tagcagaatttgaacaaaccactattttccgtgatctg 287  Q
    |||||||||||||||||||| || ||||||||||||||    
T  29165917 tagcagaatttgaacaaaccgctgttttccgtgatctg 29165954  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 27708134 - 27708106
Alignment:
Q  250 tagcagaatttgaacaaaccactattttc 278  Q
    |||||||||||||||||||||||||||||    
T  27708134 tagcagaatttgaacaaaccactattttc 27708106  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 27727960 - 27727932
Alignment:
Q  250 tagcagaatttgaacaaaccactattttc 278  Q
    |||||||||||||||||||||||||||||    
T  27727960 tagcagaatttgaacaaaccactattttc 27727932  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 6539 - 6511
Alignment:
Q  250 tagcagaatttgaacaaaccactattttc 278  Q
    |||||||||||||||||||||||||||||    
T  6539 tagcagaatttgaacaaaccactattttc 6511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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