View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5858-21 (Length: 119)
Name: Solexa-NF5858-21
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5858-21 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 4e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 27159866 - 27159752
Alignment:
| Q |
5 |
gaaccgatgataaggacgagccataagggaaggtaaatagcagcaaggccagaaaaccaaccaaaaagtttgccagcatcagatgcaaaagcaaggttat |
104 |
Q |
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| T |
27159866 |
gaaccgatgataaggacgagccataagggaaggtaaatagcagcaaggccagaaaaccaaccaaaaagtttgccagcatctgatgcaaaagcaaggttat |
27159767 |
T |
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| Q |
105 |
tgagctctacttgtg |
119 |
Q |
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| T |
27159766 |
tgagttctacttgtg |
27159752 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 27144433 - 27144330
Alignment:
| Q |
5 |
gaaccgatgataaggacgagccataagggaaggtaaatagcagcaaggccagaaaaccaaccaaaaagtttgccagcatcagatgcaaaagcaaggttat |
104 |
Q |
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| T |
27144433 |
gaaccgatgatgaggacaagccagagagggaggtaaatagcagcaaggccagaaaaccaaccaaaaagcttgccagcatctgatgcaaaagcaaggttat |
27144334 |
T |
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| Q |
105 |
tgag |
108 |
Q |
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|||| |
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| T |
27144333 |
tgag |
27144330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 27260149 - 27260212
Alignment:
| Q |
44 |
gcagcaaggccagaaaaccaaccaaaaagtttgccagcatcagatgcaaaagcaaggttattga |
107 |
Q |
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| T |
27260149 |
gcagcaaggccagaaaaccggcgaaaaagttttccggcatcagatgtaaaaggatggttattga |
27260212 |
T |
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