View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5858-3 (Length: 230)
Name: Solexa-NF5858-3
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5858-3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 24071350 - 24071572
Alignment:
| Q |
8 |
catgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctt |
107 |
Q |
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|||||||||| ||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24071350 |
catgcatgtaaaagttcacaacagaggtatcctacatcgttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctt |
24071449 |
T |
|
| Q |
108 |
tcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaac |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24071450 |
tcacatcctcaccatgtgtttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactacattactaac |
24071549 |
T |
|
| Q |
208 |
taaatactcgcagtaatatatat |
230 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
24071550 |
taaatactcccagtaatatatat |
24071572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 24079386 - 24079216
Alignment:
| Q |
8 |
catgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctt |
107 |
Q |
| |
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|||||||||| ||| || ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24079386 |
catgcatgtaaaagttcccaacagaggtatcctacatcgttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctt |
24079287 |
T |
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| Q |
108 |
tcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaa |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24079286 |
tcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaa |
24079216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 28567902 - 28568100
Alignment:
| Q |
8 |
catgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctt |
107 |
Q |
| |
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|||||||||||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28567902 |
catgcatgtagaagctcacagcagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctt |
28568001 |
T |
|
| Q |
108 |
tcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
28568002 |
tcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcattttattactaa |
28568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 28574735 - 28574928
Alignment:
| Q |
13 |
atgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcaca |
112 |
Q |
| |
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|||||||||||||| || || |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
28574735 |
atgtagaagctcacggcagagatatcctacatcgttaagactatcttctccgtcaatacttagttgtgatgcttcgtaaagggcaatgaggcctttcaaa |
28574834 |
T |
|
| Q |
113 |
tcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28574835 |
tcctcaccatgtttttcttcaaacattcttttgttgcacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
28574928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 28585933 - 28586137
Alignment:
| Q |
12 |
catgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcac |
111 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| || |
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| T |
28585933 |
catgtagaagctcacggcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagagcaataagacctttgac |
28586032 |
T |
|
| Q |
112 |
atcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaa |
211 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28586033 |
atcctcgccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttggtcactatattactaactaaa |
28586132 |
T |
|
| Q |
212 |
tactc |
216 |
Q |
| |
|
||||| |
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|
| T |
28586133 |
tactc |
28586137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 26315788 - 26315989
Alignment:
| Q |
12 |
catgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcac |
111 |
Q |
| |
|
||||||| ||||||| ||||| | |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
26315788 |
catgtagtagctcacgacaaacgtatcctaaatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagggcaacgagacctttcac |
26315887 |
T |
|
| Q |
112 |
atcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaaca--attatagttagtcactatattactaacta |
209 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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|
| T |
26315888 |
atcctcgccatgtttttcttcgaacattcttttgttacacttcaagctgtcaaataaatctgcaaaacaatattatagttagtcactatattactaacta |
26315987 |
T |
|
| Q |
210 |
aa |
211 |
Q |
| |
|
|| |
|
|
| T |
26315988 |
aa |
26315989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 28579786 - 28579990
Alignment:
| Q |
12 |
catgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcac |
111 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | ||| |||||||| || |
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|
| T |
28579786 |
catgtagaagctcacggcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagtgtaattagaccttttac |
28579885 |
T |
|
| Q |
112 |
atcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaa |
211 |
Q |
| |
|
|| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28579886 |
ttcttctccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaa |
28579985 |
T |
|
| Q |
212 |
tactc |
216 |
Q |
| |
|
||||| |
|
|
| T |
28579986 |
tactc |
28579990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 20617094 - 20617254
Alignment:
| Q |
8 |
catgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctt |
107 |
Q |
| |
|
||||| || ||||||||||||| ||| | |||| ||| || |||| |||||||||||||||||||||||| |||||||| || | |||||||||||||| |
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| T |
20617094 |
catgcttgaagaagctcacaactgaggtaccctaaatcattgagaccatcttctccttcaatacttagttgggatgcttcatacaaggcaatgagacctt |
20617193 |
T |
|
| Q |
108 |
tcacatcctcaccatgtttttct-tcaaacattcttttgttacacttcaagctgtcaaataa |
168 |
Q |
| |
|
||||||||||||||| |||| || |||| ||| ||||| |||||||||||| ||||||||| |
|
|
| T |
20617194 |
tcacatcctcaccatattttactctcaatgatt-ttttgctacacttcaagcagtcaaataa |
20617254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 2601542 - 2601425
Alignment:
| Q |
55 |
atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc |
154 |
Q |
| |
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||||||||| ||||||||||| || || ||||| || | |||||||||| ||||||||||||||| |||||| ||| |||| |||||| || || |
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| T |
2601542 |
atcttctccctcaatacttagctgggaggcttcatacatagcaatgagactcttcacatcctcaccaaatttttcactaaaatttctcttgttaaacatc |
2601443 |
T |
|
| Q |
155 |
aagctgtcaaataaatct |
172 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2601442 |
aagctgtcaaatatatct |
2601425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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