View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5858-33 (Length: 75)

Name: Solexa-NF5858-33
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5858-33
Solexa-NF5858-33
[»] chr8 (1 HSPs)
chr8 (8-72)||(11487503-11487567)
[»] chr3 (5 HSPs)
chr3 (26-72)||(10085753-10085799)
chr3 (26-72)||(10192673-10192719)
chr3 (28-72)||(10665960-10666004)
chr3 (26-63)||(11779522-11779559)
chr3 (28-71)||(10373374-10373417)


Alignment Details
Target: chr8 (Bit Score: 61; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-27
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 11487503 - 11487567
Alignment:
Q  8 ccaaagactaacactatatgattgtaggtgtctggattccatttttattttagaaagtccttcat 72  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11487503 ccaaagactaaaactatatgattgtaggtgtctggattccatttttattttagaaagtccttcat 11487567  T

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Target: chr3 (Bit Score: 43; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 10085753 - 10085799
Alignment:
Q  26 tgattgtaggtgtctggattccatttttattttagaaagtccttcat 72  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10085753 tgattgtaggtgtttggattccatttttattttagaaagtccttcat 10085799  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 10192673 - 10192719
Alignment:
Q  26 tgattgtaggtgtctggattccatttttattttagaaagtccttcat 72  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10192673 tgattgtaggtgtttggattccatttttattttagaaagtccttcat 10192719  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 10665960 - 10666004
Alignment:
Q  28 attgtaggtgtctggattccatttttattttagaaagtccttcat 72  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||    
T  10665960 attgtaggagtctggtttccatttgtattttagaaagtccttcat 10666004  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 11779559 - 11779522
Alignment:
Q  26 tgattgtaggtgtctggattccatttttattttagaaa 63  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  11779559 tgattgtaggagtctggattccatttatattttagaaa 11779522  T

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Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 10373417 - 10373374
Alignment:
Q  28 attgtaggtgtctggattccatttttattttagaaagtccttca 71  Q
    ||||||||  |||||||||||||| ||||| |||||||||||||    
T  10373417 attgtaggaatctggattccatttgtatttcagaaagtccttca 10373374  T

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