View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5858-7 (Length: 175)
Name: Solexa-NF5858-7
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5858-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 5927847 - 5927675
Alignment:
| Q |
2 |
atgaattctgattagatggaaagttatgagggaggtgaaaagcagtacaaatcaagggcaaaaaagagattttgatggaaggcaaacctgcagttgaaga |
101 |
Q |
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| T |
5927847 |
atgaattctgattagatggaaagttatgagggaggtgaaaagcagtacaaatcaagggcaaaaaagagattttgatggaaggcaaacctgcagttgaaga |
5927748 |
T |
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| Q |
102 |
atcgattttcagaagctaggaatagcagcttcgcctagaattccctttgagccgggaaccgtacgacatcgtca |
175 |
Q |
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| T |
5927747 |
atcgattttcagaagctagcaatagcagcttcacctagaattgattttgag-caggaaccgtaggacatcgtca |
5927675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 33937792 - 33937933
Alignment:
| Q |
2 |
atgaattctgattagatggaaagttatgagggaggtgaaaagcagtacaaatcaagggcaaaaaagagattttgatggaaggcaaacctgcagttgaaga |
101 |
Q |
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| T |
33937792 |
atgaattctgattagatggaaagtgacgagggaggtgaaaagcagtacaaatcaagggcaaaaaagagattttgatggaaggcaaacctgcagttggaga |
33937891 |
T |
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| Q |
102 |
atcgattttcagaagctaggaatagcagcttcgcctagaatt |
143 |
Q |
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| T |
33937892 |
atcaattttcagaagctaggaatagtagcttctcctagaatt |
33937933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 29842966 - 29842825
Alignment:
| Q |
2 |
atgaattctgattagatggaaagttatgagggaggtgaaaagcagtacaaatcaagggcaaaaaagagattttgatggaaggcaaacctgcagttgaaga |
101 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
29842966 |
atgaattttgattagatggaaagtgatgagggaggtgaaaagtagtataaatcaagggcaaaaaaaagattttgatggaaggcaaacctgcagttggaga |
29842867 |
T |
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| Q |
102 |
atcgattttcagaagctaggaatagcagcttcgcctagaatt |
143 |
Q |
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| T |
29842866 |
atcaattttcaaaagctaggaatagcagcttctcctagaatt |
29842825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 22811660 - 22811803
Alignment:
| Q |
2 |
atgaattctgattagatggaaagttatgagggaggtgaaaagcagtacaaatcaagggc-aaaaaagagattttgatggaaggcaaacctgcagttgaag |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
22811660 |
atgaattctgattagatggaaagttatgagggatgtgaaaagcagcacaaatcaagggcaaaaaaagagattttgatggaaggcaaacctggagttgaag |
22811759 |
T |
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| Q |
101 |
-aatcgattttcagaagctaggaatagcagcttcgcctagaatt |
143 |
Q |
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| T |
22811760 |
aaatcgattttcaaaagctatgaatagaagcttcacctagaatt |
22811803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 7231343 - 7231419
Alignment:
| Q |
64 |
aaagagattttgatggaaggcaaacctgcagttgaag-aatcgattttcagaagctaggaatagcagcttcgcctaga |
140 |
Q |
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| T |
7231343 |
aaagagattttgatggaaggcaaa-ctgcagttgaagaaatcgattttcaaaagctatgaatagctgcttcacctaga |
7231419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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