View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5859-15 (Length: 109)
Name: Solexa-NF5859-15
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5859-15 |
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Alignment Details
Target: chr3 (Bit Score: 64; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 46031816 - 46031721
Alignment:
| Q |
10 |
caaaggcagtacatgtaaaacgatggttgtgactaaaacaatatacagaataatgataatgttcttattgtctgctagcggagaaactatatattg |
105 |
Q |
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| T |
46031816 |
caaaggcagtacatgtaaaacgatggttgtgactaaaacaatatgcagaataatgacaatgttcttatcttctgcatgctgagaaactttatattg |
46031721 |
T |
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Target: chr8 (Bit Score: 53; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 9129637 - 9129705
Alignment:
| Q |
10 |
caaaggcagtacatgtaaaacgatggttgtgactaaaacaatatacagaataatgataatgttcttatt |
78 |
Q |
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| T |
9129637 |
caaaggcagtacatgtaaaagggtggttatgactaaaataatatacagaataatgataatgttcttatt |
9129705 |
T |
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