View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5859-2 (Length: 212)
Name: Solexa-NF5859-2
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5859-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 45990101 - 45989908
Alignment:
| Q |
19 |
tgctcatactgctaacttttgctaacaattgtcagatatctatgcctagagtcaccttcaagaagagcttatcgaaataaactgaaaacagttta-tggg |
117 |
Q |
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| T |
45990101 |
tgctcatactgctaacttttgctaacaattgtcagatatctatgcctagagtcacctttaagaagagcttatcgaaataagctgaaaacagtttagtggg |
45990002 |
T |
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| Q |
118 |
ggtgtcaaaagttgtttctataagttctactaaacagactcatgtccaacacaccttataagttctactaatagttaagctcaaataagccaata |
212 |
Q |
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| T |
45990001 |
ggtgtc-aaagttgttactataagttctactaaatagactcatgtccaacacacgttataagttctactaatagttaagctcaaataagccaata |
45989908 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 32821836 - 32821895
Alignment:
| Q |
81 |
aagagcttatcgaaataaactgaaaacagtttatgggggtgtcaaaagttgtttctataa |
140 |
Q |
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| T |
32821836 |
aagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataa |
32821895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 4966182 - 4966261
Alignment:
| Q |
80 |
gaagagcttatcgaaataaactgaaaacagtttatgggggtgtcaaaagttgtttctataagttctactaaacagactca |
159 |
Q |
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| T |
4966182 |
gaagagcttatggaaataaactgaaaacaacttatggacatatcataagtggtttctataagctctcctaaacagtctca |
4966261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 40428582 - 40428630
Alignment:
| Q |
81 |
aagagcttatcgaaataaactgaaaacagtttatgggggtgtcaaaagt |
129 |
Q |
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| T |
40428582 |
aagagcttatggaaataagctgaaaacagtttatcggcgtgtcataagt |
40428630 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 32171495 - 32171548
Alignment:
| Q |
82 |
agagcttatcgaaataaactgaaaacagtttatgggggtgtcaaaagttgtttc |
135 |
Q |
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| T |
32171495 |
agagcttatggaaataagctgaaaacagttcatggaggtatcataagttgtttc |
32171548 |
T |
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