View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5859-20 (Length: 87)

Name: Solexa-NF5859-20
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5859-20
Solexa-NF5859-20
[»] chr3 (7 HSPs)
chr3 (22-85)||(23359923-23359983)
chr3 (22-85)||(23364744-23364804)
chr3 (22-85)||(23695222-23695282)
chr3 (22-85)||(23713662-23713722)
chr3 (22-85)||(23732118-23732178)
chr3 (22-85)||(23750573-23750633)
chr3 (26-85)||(24113151-24113207)


Alignment Details
Target: chr3 (Bit Score: 50; Significance: 3e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 23359923 - 23359983
Alignment:
Q  22 tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaat 85  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23359923 tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaat 23359983  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 23364744 - 23364804
Alignment:
Q  22 tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaat 85  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23364744 tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaat 23364804  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 23695222 - 23695282
Alignment:
Q  22 tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaat 85  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23695222 tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaat 23695282  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 23713662 - 23713722
Alignment:
Q  22 tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaat 85  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23713662 tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaat 23713722  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 23732118 - 23732178
Alignment:
Q  22 tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaat 85  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23732118 tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaat 23732178  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 23750573 - 23750633
Alignment:
Q  22 tgtacaatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaat 85  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23750573 tgtacaatatcaaagtttgcaccataa---caacaaccgcaatttatacacacgagttagcaat 23750633  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 24113207 - 24113151
Alignment:
Q  26 caatatcaaagtttgcaccataataacaacaaccgcaatttatacacacgagttagcaat 85  Q
    |||| ||||||||||||||||||   ||||||| |||||||| |||||||||||||||||    
T  24113207 caatgtcaaagtttgcaccataa---caacaactgcaatttaaacacacgagttagcaat 24113151  T

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