View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5859-21 (Length: 85)
Name: Solexa-NF5859-21
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5859-21 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 61; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-27
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 36357535 - 36357610
Alignment:
| Q |
7 |
actaatgtactccagcagggtgcatatgttagcgctcttattgattaagacaccaccaaatagtggaatagagatttga |
85 |
Q |
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| T |
36357535 |
actaatgtactccagcagggtgcatatgttagcgctcttattgattaaga---caccaaatagtgcaatagagatttga |
36357610 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 40049807 - 40049875
Alignment:
| Q |
14 |
tactccagcagggtgcatatgttagcgctcttattgattaagacaccaccaaatagtggaatagagatttga |
85 |
Q |
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| T |
40049807 |
tactccaacaagatgcatatgtttgcgctcttattgatcaaga---caccaagtagtggaatagagatttga |
40049875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 35650192 - 35650124
Alignment:
| Q |
14 |
tactccagcagggtgcatatgttagcgctcttattgattaagacaccaccaaatagtggaatagagatttga |
85 |
Q |
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| T |
35650192 |
tactccaacaagatgcatatgtttgcgctcttattgatcaagacacca---agcagtggaatagagatttga |
35650124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 41271412 - 41271344
Alignment:
| Q |
14 |
tactccagcagggtgcatatgttagcgctcttattgattaagacaccaccaaatagtggaatagagatttga |
85 |
Q |
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| T |
41271412 |
tactccaacaagatgcatatgtttgcgctcttattgatcaagacacca---agcagtggaatagagatttga |
41271344 |
T |
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