View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5859-27 (Length: 40)
Name: Solexa-NF5859-27
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5859-27 |
 |  |
|
| [»] scaffold0281 (1 HSPs) |
 |  |  |
|
| [»] scaffold0024 (2 HSPs) |
 |  |  |
|
| [»] scaffold0498 (1 HSPs) |
 |  |  |
|
| [»] scaffold0048 (1 HSPs) |
 |  |  |
|
| [»] scaffold0005 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0281 (Bit Score: 39; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 334 - 296
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
334 |
atctcttatgttgaatatattctcaccctctagtggcgg |
296 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 39; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 106449 - 106411
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
106449 |
atctcttatgttgaatatattctcaccctctagtggcgg |
106411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 108816 - 108778
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
108816 |
atctcttatgttgaatatattatcaccctctagtggcgg |
108778 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.00000000000004; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4860867 - 4860905
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4860867 |
atctcttatgttgaatatattctcaccctctagtggcgg |
4860905 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9882003 - 9881965
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9882003 |
atctcttatgttgaatatattctcaccctctagtggcgg |
9881965 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40387268 - 40387233
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtgg |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
40387268 |
atctcttatgttgaatatattctcaccctctagtgg |
40387233 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 42145070 - 42145035
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42145070 |
tcttatgttgaatatattctcaccctctagtggcgg |
42145035 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 17289251 - 17289218
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggc |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17289251 |
tcttatgttgaatatattctcaccctctagtggc |
17289218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11510193 - 11510231
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11510193 |
atctcttatgttgaatatattctcaccctctagtggcgg |
11510231 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18149182 - 18149220
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18149182 |
atctcttatgttgaatatattctcaccctctagtggcgg |
18149220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34705432 - 34705394
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
34705432 |
atctcttgtgttggatatattctcaccctctagtggcgg |
34705394 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 11316680 - 11316644
Alignment:
| Q |
3 |
ctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
11316680 |
ctcttatgttgagtatattctcaccctctagaggcgg |
11316644 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.00000000000004; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11150081 - 11150043
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11150081 |
atctcttatgttgaatatattctcaccctctagtggcgg |
11150043 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15703192 - 15703154
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15703192 |
atctcttatgttgaatatattctcaccctctagtggcgg |
15703154 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23972599 - 23972561
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23972599 |
atctcttatgttgaatatattctcaccctctagtggcgg |
23972561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 13885603 - 13885638
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13885603 |
tcttatgttgaatatattctcaccctctagtggcgg |
13885638 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 25127745 - 25127780
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25127745 |
tcttatgttgaatatattctcaccctctagtggcgg |
25127780 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19613469 - 19613507
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
19613469 |
atctcttgtgttggatatattctcaccctctagtggcgg |
19613507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 27; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14644377 - 14644339
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
14644377 |
atctcttacgttgaatatagtctcaccatctagtggcgg |
14644339 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.00000000000004; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39729210 - 39729248
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39729210 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39729248 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18539672 - 18539709
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcg |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18539672 |
atctcttatgttgaatatattctcaccctctagtggcg |
18539709 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3473357 - 3473392
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtgg |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3473357 |
atctcttatgttgaatatattctcaccctctagtgg |
3473392 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 19595476 - 19595443
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggc |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
19595476 |
tcttatgttgaatatattctcaccctctagtggc |
19595443 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 18695119 - 18695154
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18695119 |
tcttatgttgaatatattatcaccctctagtggcgg |
18695154 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 18710638 - 18710673
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18710638 |
tcttatgttgaatatattatcaccctctagtggcgg |
18710673 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 29497616 - 29497651
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
29497616 |
tcttatgttgaatatattctcaccctctagtggcgg |
29497651 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 39437525 - 39437556
Alignment:
| Q |
8 |
atgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39437525 |
atgttgaatatattctcaccctctagtggcgg |
39437556 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 27; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32039404 - 32039366
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
32039404 |
atctcttttgttggataaattctcaccctctagtggcgg |
32039366 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 89639 - 89604
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
89639 |
tcttatgttgaatatattctcaccctctagtggcgg |
89604 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 52272407 - 52272372
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
52272407 |
tcttatgttgaatatattctcaccctctagtggcgg |
52272372 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23633796 - 23633834
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23633796 |
atctcttatgttgaatatattatcaccctctagtggcgg |
23633834 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 18515265 - 18515300
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18515265 |
tcttatgttgaatatattttcaccctctagtggcgg |
18515300 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 27; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29447297 - 29447335
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
29447297 |
atctcttatgttgagtacattttcaccctctagtggcgg |
29447335 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0498 (Bit Score: 35; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0498
Description:
Target: scaffold0498; HSP #1
Raw Score: 35; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11782 - 11744
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11782 |
atctcttctgttgaatatattctcaccctctagtggcgg |
11744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.000000000009; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19565699 - 19565737
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19565699 |
atctcttatgttgagtatattctcaccctctagtggcgg |
19565737 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19568334 - 19568372
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19568334 |
atctcttatgttgagtatattctcaccctctagtggcgg |
19568372 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19770572 - 19770608
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggc |
37 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19770572 |
atctcttatgttgaatatattctcaccttctagtggc |
19770608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 9547388 - 9547353
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9547388 |
tcttatgttgaatatattctcaccctatagtggcgg |
9547353 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.000000000009; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34892004 - 34891966
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34892004 |
atctattatgttgaatatattctcaccctctagtggcgg |
34891966 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 32625900 - 32625935
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32625900 |
tcttatgttgaatatattcccaccctctagtggcgg |
32625935 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16092001 - 16091964
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcg |
38 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
16092001 |
atctcttgtgttggatatattctcaccctctagtggcg |
16091964 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 24534588 - 24534553
Alignment:
| Q |
4 |
tcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |
|
|
| T |
24534588 |
tcttatgtcgaatatattctcaccctctagttgcgg |
24534553 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 27; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 32
Target Start/End: Original strand, 20265229 - 20265255
Alignment:
| Q |
6 |
ttatgttgaatatattctcaccctcta |
32 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
20265229 |
ttatgttgaatatattctcaccctcta |
20265255 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 29; Significance: 0.00000003; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 69546 - 69574
Alignment:
| Q |
6 |
ttatgttgaatatattctcaccctctagt |
34 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
69546 |
ttatgttgaatatattctcaccctctagt |
69574 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 27; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 27; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 172915 - 172953
Alignment:
| Q |
1 |
atctcttatgttgaatatattctcaccctctagtggcgg |
39 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
172915 |
atctcttacgttgaatatagtctcaccatctagtggcgg |
172953 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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