View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5859-8 (Length: 138)

Name: Solexa-NF5859-8
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5859-8
Solexa-NF5859-8
[»] chr4 (2 HSPs)
chr4 (1-128)||(49200437-49200564)
chr4 (2-77)||(26626562-26626637)
[»] chr1 (2 HSPs)
chr1 (1-110)||(41863267-41863376)
chr1 (51-118)||(9825435-9825502)
[»] chr2 (2 HSPs)
chr2 (16-122)||(24323116-24323222)
chr2 (2-44)||(9361680-9361722)
[»] chr6 (2 HSPs)
chr6 (2-44)||(34417286-34417328)
chr6 (2-37)||(8498235-8498270)
[»] chr3 (2 HSPs)
chr3 (2-42)||(776044-776084)
chr3 (2-42)||(32813008-32813048)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 3e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 49200564 - 49200437
Alignment:
Q  1 tttattcaatggaacaaggttaatcataactagaatgggaaaatacatgcttgagggtgaggtaatatctgaaagtagtgttggagaaaaggtatttata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  49200564 tttattcaatggaacaaggttaatcataactagaatgggaaaatatgtgcttgaggatgaggtaatatccgaaagtagtgttggagaaaaagtatttata 49200465  T
Q  101 acgcatttatttctatcacctcagatgt 128  Q
     |||||||||||||||||||||||||||    
T  49200464 ccgcatttatttctatcacctcagatgt 49200437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 26626637 - 26626562
Alignment:
Q  2 ttattcaatggaacaaggttaatcataactagaatgggaaaatacatgcttgagggtgaggtaatatctgaaagta 77  Q
    |||| |||||||||||||||||||||||| |||||||||||||   ||||||| | | |||| ||||||| |||||    
T  26626637 ttatgcaatggaacaaggttaatcataaccagaatgggaaaatttgtgcttgaagctaaggttatatctggaagta 26626562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41863376 - 41863267
Alignment:
Q  1 tttattcaatggaacaaggttaatcataactagaatgggaaaatacatgcttgagggtgaggtaatatctgaaagtagtgttggagaaaaggtatttata 100  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||  |||| |||||| ||| ||||||||  |||||||||||||||||  ||||||||    
T  41863376 tttatgcaatggaacaaggttgatcataaccagaatgggaaaatatgtgctagagggtaaggaaatatctggtagtagtgttggagaaaaaatatttata 41863277  T
Q  101 acgcatttat 110  Q
     |||||||||    
T  41863276 tcgcatttat 41863267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 9825435 - 9825502
Alignment:
Q  51 ttgagggtgaggtaatatctgaaagtagtgttggagaaaaggtatttataacgcatttatttctatca 118  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||| ||  |||||||||||||    
T  9825435 ttgagggtgaggtaatatctggaagtagtgttggagaaaaaatatttataccgtctttatttctatca 9825502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 24323222 - 24323116
Alignment:
Q  16 aaggttaatcataactagaatgggaaaatacatgcttgagggtgaggtaatatctgaaagtagtgttggagaaaaggtatttataacgcatttatttcta 115  Q
    |||||| ||||||||||||||| |||||||| |||| |||||| ||||||||| ||  ||| ||||||||||||| ||||||||| ||| ||||| ||||    
T  24323222 aaggttgatcataactagaatgagaaaatacgtgctagagggtaaggtaatatttggtagtggtgttggagaaaaagtatttataccgcgtttatctcta 24323123  T
Q  116 tcacctc 122  Q
    |||||||    
T  24323122 tcacctc 24323116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 9361680 - 9361722
Alignment:
Q  2 ttattcaatggaacaaggttaatcataactagaatgggaaaat 44  Q
    |||| ||||||||||||| |||||||||||| |||||||||||    
T  9361680 ttatgcaatggaacaaggctaatcataactataatgggaaaat 9361722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 34417328 - 34417286
Alignment:
Q  2 ttattcaatggaacaaggttaatcataactagaatgggaaaat 44  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  34417328 ttatgcaacggaacaaggttaatcataactagaatgggaaaat 34417286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 8498270 - 8498235
Alignment:
Q  2 ttattcaatggaacaaggttaatcataactagaatg 37  Q
    |||| ||||||||||||||||| |||||||||||||    
T  8498270 ttatgcaatggaacaaggttaaccataactagaatg 8498235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 776044 - 776084
Alignment:
Q  2 ttattcaatggaacaaggttaatcataactagaatgggaaa 42  Q
    |||| |||||||||||| |||||||||||||| ||||||||    
T  776044 ttatgcaatggaacaagattaatcataactaggatgggaaa 776084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 32813048 - 32813008
Alignment:
Q  2 ttattcaatggaacaaggttaatcataactagaatgggaaa 42  Q
    |||| |||||||||||| |||||||||||||| ||||||||    
T  32813048 ttatgcaatggaacaagattaatcataactaggatgggaaa 32813008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University