View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5860-1 (Length: 208)
Name: Solexa-NF5860-1
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5860-1 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 4563810 - 4563930
Alignment:
| Q |
7 |
aagacaaaagaaagagaatggataaaagtgaagagaatacctgaagagattcatttgagagaaccaagaagaaatgtttttggtttctttctatgtgttt |
106 |
Q |
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| T |
4563810 |
aagacaaaagaaagagaatggataaaagtgaagagaatacctgaagagattcatttgagagaaccaagaagaaatgtttttggtttctttctctgtgttt |
4563909 |
T |
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| Q |
107 |
ggatacaaaacagaagaatac |
127 |
Q |
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| T |
4563910 |
ggatacaaaacagaagaatac |
4563930 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 4563956 - 4564007
Alignment:
| Q |
153 |
atctcaagaagatgcagctgctacataagccagaagacagagtgtgtctgtg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4563956 |
atctcaagaagatgcagctgctacataagccagaagacagagtgtgtttgtg |
4564007 |
T |
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