View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5860-2 (Length: 144)
Name: Solexa-NF5860-2
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5860-2 |
 | |
|
| [»] scaffold0202 (1 HSPs) |
| | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] scaffold0139 (1 HSPs) |
| | |
|
| [»] scaffold0909 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 1e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 12100212 - 12100078
Alignment:
| Q |
8 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcgga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12100212 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcgga |
12100113 |
T |
|
| Q |
108 |
atcatgtctaacacgtcacataggatctcaaaccc |
142 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| |
|
|
| T |
12100112 |
atcatgtctaacgcatcacacaggatctcaaaccc |
12100078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 547696 - 547562
Alignment:
| Q |
8 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcgga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
547696 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggttccgtaaaagtgaaaaaagaccccggctgtcgga |
547597 |
T |
|
| Q |
108 |
atcatgtctaacacgtcacataggatctcaaaccc |
142 |
Q |
| |
|
|||||||| ||| | ||||| |||||||||||||| |
|
|
| T |
547596 |
atcatgtccaacgcatcacacaggatctcaaaccc |
547562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 20440288 - 20440177
Alignment:
| Q |
27 |
ggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatcatgtctaacacgtcac |
126 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||| || ||||| || |||| |||||| |||||||| |||| | |||||||||||||| |||| | |
|
|
| T |
20440288 |
ggatgtgcactaataggtacccaggaacctttatccacccctttcgttccgt-aaagtggaaaaagactccgggcgaaggaatcatgtctaaggcgtcgc |
20440190 |
T |
|
| Q |
127 |
ataggatctcaaa |
139 |
Q |
| |
|
| || |||||||| |
|
|
| T |
20440189 |
acagaatctcaaa |
20440177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 9e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 25553855 - 25553989
Alignment:
| Q |
8 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcgga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
25553855 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggttccgtaaaagtgaaaaaagaccccggctgttgga |
25553954 |
T |
|
| Q |
108 |
atcatgtctaacacgtcacataggatctcaaaccc |
142 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||| |
|
|
| T |
25553955 |
atcatgtctagcgcgtcacacaggatctcaaaccc |
25553989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 25558734 - 25558868
Alignment:
| Q |
8 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcgga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
25558734 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggttccgtaaaagtgaaaaaagaccccggctgttgga |
25558833 |
T |
|
| Q |
108 |
atcatgtctaacacgtcacataggatctcaaaccc |
142 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||| |
|
|
| T |
25558834 |
atcatgtctagcgcgtcacacaggatctcaaaccc |
25558868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 21833326 - 21833457
Alignment:
| Q |
12 |
aagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatca |
111 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||| ||||||||||| |||||||| || || ||||| ||||| ||||| ||||| | ||||||| |
|
|
| T |
21833326 |
aagagttgttttccagggtgagcactaatagggacccaggaacctttatccactcctttcgttcc-taaaaatgaaagaagactccggcggaaggaatca |
21833424 |
T |
|
| Q |
112 |
tgtctaacacgtcacataggatctcaaacccac |
144 |
Q |
| |
|
| || || ||||||| ||||||||||| |||| |
|
|
| T |
21833425 |
tatccaaggcgtcacacaggatctcaaaaccac |
21833457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 5011218 - 5011131
Alignment:
| Q |
30 |
tgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatcatgtcta |
117 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||| || || || || || |||||||| ||||| || |||| |||||||| |
|
|
| T |
5011218 |
tgagcactaataggaacccaagatcccttatccactccttttgttccatagaaatggaaaaagactccggccgtaggaaccatgtcta |
5011131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 70; Significance: 6e-32; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 12023 - 11914
Alignment:
| Q |
9 |
gggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaa |
108 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| || | |||| |
|
|
| T |
12023 |
gggaagagctgttttccgggatgagcgctaatgggaacccaggaacctttatctactcctttggtcccataaaagtggaaaaagaccccagcagaaggaa |
11924 |
T |
|
| Q |
109 |
tcatgtctaa |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
11923 |
tcatgtctaa |
11914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 4e-24; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 16687057 - 16687188
Alignment:
| Q |
12 |
aagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatca |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| || || ||||| ||||| ||||| ||||||| ||||||| |
|
|
| T |
16687057 |
aagagttgttttccaggatgagcactaatagggacccaggaacctttatccactcctttcgttccataaaa-tgaaagaagactccggctgagggaatca |
16687155 |
T |
|
| Q |
112 |
tgtctaacacgtcacataggatctcaaacccac |
144 |
Q |
| |
|
| || || ||||||| ||||||||||| |||| |
|
|
| T |
16687156 |
tatccaaggcgtcacacaggatctcaaaaccac |
16687188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 19013309 - 19013231
Alignment:
| Q |
9 |
gggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaa |
87 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19013309 |
gggaagagctgttttccaggatgagcgctaatgggaacccaggaacctttatctactcctttggtcccataaaagtgaa |
19013231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 19020941 - 19020863
Alignment:
| Q |
9 |
gggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaa |
87 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19020941 |
gggaagagctgttttccaggatgagcgctaatgggaacccaggaacctttatctactcctttggtcccataaaagtgaa |
19020863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 22466053 - 22466185
Alignment:
| Q |
12 |
aagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatca |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||| || || ||||| ||||| ||||| ||||| | ||||||| |
|
|
| T |
22466053 |
aagagttgttttccaggatgagcactaatagggacccaggaacccttatcaactcctttcgttccataaaaatgaaagaagactccggcggaaggaatca |
22466152 |
T |
|
| Q |
112 |
tgtctaacacgtcacataggatctcaaacccac |
144 |
Q |
| |
|
| || || ||||||| ||||||||||| |||| |
|
|
| T |
22466153 |
tatccaaggcgtcacacaggatctcaaaaccac |
22466185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 34332247 - 34332152
Alignment:
| Q |
20 |
ttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatcatgtc |
115 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||| ||||| |||||||| || || || ||| |||||||| ||||||| || |||||||| |
|
|
| T |
34332247 |
ttttccgggatgagcactaattgggacccaggaacccttatccactccttttgttccatagaagcagaaaaagactccggctgaggggatcatgtc |
34332152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 1e-23; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 5194033 - 5194136
Alignment:
| Q |
12 |
aagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| || || ||||||||||||||||| || |||| ||||||| |
|
|
| T |
5194033 |
aagagttgttttccgggatgagcactaattgggacccaggaacccttatccactcctttcgttccataaaagtgaaaaaagactccagctgagggaatca |
5194132 |
T |
|
| Q |
112 |
tgtc |
115 |
Q |
| |
|
|||| |
|
|
| T |
5194133 |
tgtc |
5194136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 14432002 - 14432088
Alignment:
| Q |
8 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagac |
94 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| ||||||||||| || || || |||||||| ||||||||||||||||| ||||| |
|
|
| T |
14432002 |
agggaagagttgtttacccggatgggcactaattggaacccaagaccccttgtccactcctttagtcccgtaaaagtgaaagaagac |
14432088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 96234 - 96135
Alignment:
| Q |
1 |
caaaggaagggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggc |
100 |
Q |
| |
|
|||||| ||| ||||| ||||| || ||||| |||||||| || ||||| ||||||||||| |||||||| || ||||||||||| |||||||| ||||| |
|
|
| T |
96234 |
caaagggaggaaagagctgtttcccaggatgtgcactaatgggtacccaggaacctttatccactcctttcgttccgtaaaagtggaaaaagactccggc |
96135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 16090324 - 16090436
Alignment:
| Q |
27 |
ggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatcatgtctaacacgtcac |
126 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| || ||||| | |||||||| || |||||||| ||||||| |||| ||||||||| |||| | |
|
|
| T |
16090324 |
ggatgagcgctaataggaacccaggaacctttatccacccctttcattccgtaaaaatggaaaaagactccggctgaaggaaccatgtctaaagcgtcgc |
16090423 |
T |
|
| Q |
127 |
ataggatctcaaa |
139 |
Q |
| |
|
||| |||||||| |
|
|
| T |
16090424 |
ataaaatctcaaa |
16090436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14562526 - 14562427
Alignment:
| Q |
1 |
caaaggaagggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggc |
100 |
Q |
| |
|
|||||| ||| ||||| ||||| || ||||| || ||||| || ||||| ||||||||||| |||||||| || ||||| ||||| |||||||| ||||| |
|
|
| T |
14562526 |
caaagggaggaaagagctgtttcccaggatgtgcgctaattggtacccaggaacctttatccactcctttcgttccgtagaagtggaaaaagactccggc |
14562427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 20501903 - 20502021
Alignment:
| Q |
9 |
gggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaa |
108 |
Q |
| |
|
|||||||| ||||| || ||||| || ||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||| || || | |||| |
|
|
| T |
20501903 |
gggaagagctgtttcccaggatgcgcgctaatgggaactcaggaacctttatctactcctttcgtttcgtaaaagtgaaaaaagactccagcagaaggaa |
20502002 |
T |
|
| Q |
109 |
tcatgtctaacacgtcaca |
127 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
20502003 |
tcatatctaaagcgtcaca |
20502021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0139
Description:
Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6900 - 6765
Alignment:
| Q |
1 |
caaaggaagggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggc |
100 |
Q |
| |
|
|||||| ||| || |||||||| || |||| || |||||||||||||| ||||||||||| |||||| | || || ||||| ||||||||||| ||||| |
|
|
| T |
6900 |
caaagggaggaaaaagttgtttcccatgatgtgcgctaataggaacccaggaacctttatccactcctgtcgttccataaaaatgaaaaaagactccggc |
6801 |
T |
|
| Q |
101 |
tgtcggaatcatgtctaacacgtcacataggatctc |
136 |
Q |
| |
|
| |||||||| ||||| |||| ||||| ||||| |
|
|
| T |
6800 |
ggagggaatcatttctaaagcgtcgcatagaatctc |
6765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 11534835 - 11534908
Alignment:
| Q |
27 |
ggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggc |
100 |
Q |
| |
|
||||| |||||||| || ||||| ||||||||||| |||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
11534835 |
ggatgtgcactaatgggtacccaggaacctttatccactcctttcattccgtaaaagtggaaaaagactccggc |
11534908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 12530888 - 12530801
Alignment:
| Q |
30 |
tgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagaccccggctgtcggaatcatgtcta |
117 |
Q |
| |
|
||||| ||||||||||||||||| || || || |||||||| || ||||| || || |||||||| ||||| || |||| |||||||| |
|
|
| T |
12530888 |
tgagcgctaataggaacccaagatcccttgtccactccttttgttccgtagaaatggaaaaagactccggccgtaggaaccatgtcta |
12530801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0909 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0909
Description:
Target: scaffold0909; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 3627 - 3713
Alignment:
| Q |
8 |
agggaagagttgttttccgggatgagcactaataggaacccaagaacctttatctactcctttggtcccgtaaaagtgaaaaaagac |
94 |
Q |
| |
|
||||||||| ||||| || ||||||||||| || || |||||| | || ||||| || ||||| || ||||| |||||||||||||| |
|
|
| T |
3627 |
agggaagagctgtttgcccggatgagcactgattgggacccaaaaccccttatccacacctttagttccgtagaagtgaaaaaagac |
3713 |
T |
|
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