View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5860-6 (Length: 130)
Name: Solexa-NF5860-6
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5860-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 4e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 23988922 - 23988813
Alignment:
| Q |
21 |
gatcccattgagtgaaatgtaaagaagaagttacggatgccaagttactttctcatttaaaacgtacaaatttgttttgcttctaagcgtctgtggcggg |
120 |
Q |
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| T |
23988922 |
gatcccattgagttaaatgtaaagaagaagttacggatgccaagttactttcacatttaaaacgtacaaatttgttttgcttctaagcgtctgtggcggg |
23988823 |
T |
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| Q |
121 |
ccaaggtgca |
130 |
Q |
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| T |
23988822 |
ccaaggtgca |
23988813 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 39596443 - 39596375
Alignment:
| Q |
60 |
ccaagttactttctcatttaaaacgtacaaatttgttttgcttctaagcgtctgtggcgggccaaggtg |
128 |
Q |
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| T |
39596443 |
ccaagtcacattcacatttaaaacgtacggatttgttctgcttctgagtgtctgcggctggccaaggtg |
39596375 |
T |
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