View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5860-9 (Length: 127)
Name: Solexa-NF5860-9
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5860-9 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 48749444 - 48749526
Alignment:
| Q |
8 |
gaaactgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtgagtcagtaacataatttgtttttattttctt |
90 |
Q |
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| T |
48749444 |
gaaactgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtcagtcagtaacataatttgtttttattttctt |
48749526 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 48749536 - 48749581
Alignment:
| Q |
82 |
tattttcttccatgattcgggaagtgtaaatttaagatgagataaa |
127 |
Q |
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| T |
48749536 |
tattttcttccatgattcgggaagtgtaaatttaagatgagataaa |
48749581 |
T |
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