View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5861-11 (Length: 144)
Name: Solexa-NF5861-11
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 43384150 - 43384009
Alignment:
| Q |
7 |
atgaaataagaggggtaattagaattaggatgcaaataaaatgaaacatacatgagcaacggtgat----gatgacctaataacttaactaagtagtaaa |
102 |
Q |
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| T |
43384150 |
atgaaataagagaggtaattagaattagggtgcaaataaaatgaaacaaacatgagcaacggtgatcgatgatgacctaataacttaattaagtagtaaa |
43384051 |
T |
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| Q |
103 |
atatatattagaagagtaaagaagaagaaattaattaattaa |
144 |
Q |
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| T |
43384050 |
atatatattagaagagtaaagaagaagaaattaattaattaa |
43384009 |
T |
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