View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5861-12 (Length: 144)
Name: Solexa-NF5861-12
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 32809830 - 32809966
Alignment:
| Q |
7 |
agacaatgaatcaaaatttcaaagtaaaattgcaatgagaaatactaaattgagattctagttaaaaattataattcttttgtaaattatagacaaacct |
106 |
Q |
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| T |
32809830 |
agacaatgagtcaaaatttcaaagtaaaattgcaatgagaaatactaaattgggattctagttaagaaatatgattcttttgtaaattgtagacaaacct |
32809929 |
T |
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| Q |
107 |
ccactttctttttctctttttaaggatttgagttaagg |
144 |
Q |
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| T |
32809930 |
ccactttctttttctc-ttttaaggatttgagttaagg |
32809966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 44659950 - 44659895
Alignment:
| Q |
40 |
aatgagaaatactaaattgagattctagttaaaaattataattcttttgtaaatta |
95 |
Q |
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| T |
44659950 |
aatgaggaattctaaatcgagattctcgttaatgattatgattcttttgtaaatta |
44659895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21569605 - 21569707
Alignment:
| Q |
17 |
tcaaaatttcaaagtaaaattgcaatgagaaatactaaattgagattctagttaaaaattataattcttttgtaaattatagacaaacctccactttctt |
116 |
Q |
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| T |
21569605 |
tcaaaatttctaagtaaaattgcaataagaaattgtaaattgagatactagctaaagattatggttcatttgaaaattaccgacaaaaccccacgttctt |
21569704 |
T |
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| Q |
117 |
ttt |
119 |
Q |
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| T |
21569705 |
ttt |
21569707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 35345449 - 35345400
Alignment:
| Q |
20 |
aaatttcaaagtaaaattgcaatgagaaatactaaattgagattctagtt |
69 |
Q |
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| T |
35345449 |
aaatttctaagaaaaattgcaatgaaaaatcctaaattgagattctagtt |
35345400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 51108829 - 51108714
Alignment:
| Q |
10 |
caatgaatcaaaatttcaaagtaaaattgcaatgagaaatactaaattgagattctagttaaaaattataattcttttgtaaattatagacaaacctcca |
109 |
Q |
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| T |
51108829 |
caatgagtcgaaatttctaagtgaaattgcaaagaagaatcataaattggaattctagttaaggattgtggttcttttgtaaattatagataaaactctg |
51108730 |
T |
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| Q |
110 |
ctttctttttctcttt |
125 |
Q |
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| T |
51108729 |
ttttctttctctcttt |
51108714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 16937991 - 16938076
Alignment:
| Q |
9 |
acaatgaatcaaaatttcaaagtaaaattgcaatgagaaatactaaattgagattctagttaaaaattataattcttttgtaaatt |
94 |
Q |
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| T |
16937991 |
acaatgagtcaaaatttcaaagcaaaattgcaatgaggaattcaaaaacgagattcttgttaagcattatggtacttttgtaaatt |
16938076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 43135340 - 43135297
Alignment:
| Q |
28 |
aagtaaaattgcaatgagaaatactaaattgagattctagttaa |
71 |
Q |
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| T |
43135340 |
aagtaaaattgtagtgaggaatcctaaattgagattctagttaa |
43135297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 30632768 - 30632835
Alignment:
| Q |
52 |
taaattgagattctagttaaaaattataattcttttgtaaattatagacaaacctccactttcttttt |
119 |
Q |
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|||||||| |||||||||||| ||| ||||| | |||||||| |||||||| || | |||||||||| |
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| T |
30632768 |
taaattgaaattctagttaaagatttaaattcatctgtaaattgtagacaaaacttcgctttcttttt |
30632835 |
T |
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