View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5861-17 (Length: 127)
Name: Solexa-NF5861-17
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-17 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 6e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 25163300 - 25163383
Alignment:
| Q |
8 |
attatttcatcgtgtttcatgtcaagcaattattataccttttcaaagaaaaatatgtcaaacaattataaattacttcctttt |
91 |
Q |
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| T |
25163300 |
attatttcatcgtgtttcatgtcaagcaattattataccttttcaaagaaaaatatgtcaaacaattataaattactttctttt |
25163383 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 25163337 - 25163378
Alignment:
| Q |
86 |
ccttttcaaagaaaaatatgtcaaacaattataaattacttt |
127 |
Q |
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| T |
25163337 |
ccttttcaaagaaaaatatgtcaaacaattataaattacttt |
25163378 |
T |
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