View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5861-2 (Length: 229)

Name: Solexa-NF5861-2
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5861-2
Solexa-NF5861-2
[»] chr7 (11 HSPs)
chr7 (1-214)||(4631383-4631596)
chr7 (1-214)||(4667397-4667604)
chr7 (69-131)||(4637378-4637440)
chr7 (69-131)||(4711584-4711646)
chr7 (69-131)||(4864446-4864508)
chr7 (56-133)||(4654004-4654081)
chr7 (67-131)||(4696702-4696766)
chr7 (67-130)||(4644214-4644277)
chr7 (56-125)||(4783353-4783422)
chr7 (56-125)||(4815782-4815851)
chr7 (69-133)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (69-214)||(18925174-18925319)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4631383 - 4631596
Alignment:
Q  1 gcatagacacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctcatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631383 gcatagacacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctcatttgg 4631482  T
Q  101 agcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaagggtaaggttggttcctact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631483 agcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaagggtaaggttggttcctact 4631582  T
Q  201 ttgactgtgaagag 214  Q
    ||||||||||||||    
T  4631583 ttgactgtgaagag 4631596  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4667397 - 4667604
Alignment:
Q  1 gcatagacacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctcatttgg 100  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||      |||||||||||||||| || ||| |||||   | |    
T  4667397 gcatagacacaatctcaattccgttgatgaaagcaaaagcatttaattggtttgtgttt------ttgggaatgaaagttacgtctagtttctccccttg 4667490  T
Q  101 agcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaagggtaaggttggttcctact 200  Q
         | || ||||||||||||||||||||||||||| ||||||||| ||||||||| || ||  |||||||||||||||||||||||||||||||||||    
T  4667491 tttggtatggatgcaatattctttggtgattgtcttgttatcgtttggaagccaaagtgaagggctaaagtctttgagaagggtaaggttggttcctact 4667590  T
Q  201 ttgactgtgaagag 214  Q
    ||||||||||||||    
T  4667591 ttgactgtgaagag 4667604  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 4637378 - 4637440
Alignment:
Q  69 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 131  Q
    ||||||||||||||||||| ||| ||||||||    |||||||||||||||||||||||||||    
T  4637378 ggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctttggtgatt 4637440  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 4711646 - 4711584
Alignment:
Q  69 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 131  Q
    ||||||||||||||| ||||||||||||||||    ||||| |||||||||||||||||||||    
T  4711646 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgatt 4711584  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 4864446 - 4864508
Alignment:
Q  69 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 131  Q
    |||||||||||||||||||||||||||||||     ||||| |||||||||||||||||||||    
T  4864446 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctttggtgatt 4864508  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 4654004 - 4654081
Alignment:
Q  56 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgt 133  Q
    |||||| || |||||||||||||||||||||||||||| ||| ||    | ||| |||||||||||||||||||||||    
T  4654004 gtttgtgttgttgggaatgaaagttatgtttagcttcttattcggttggacttggatgcaatattctttggtgattgt 4654081  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 4696766 - 4696702
Alignment:
Q  67 tgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 131  Q
    ||||||||||||||||||||| ||||||||||||     |||| |||||||||||||||||||||    
T  4696766 tgggaatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatattctttggtgatt 4696702  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 4644214 - 4644277
Alignment:
Q  67 tgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgat 130  Q
    |||||||||||||||||||||||||||||||||    |||||| |||||||| |||||| ||||    
T  4644214 tgggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctttgatgat 4644277  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 4783422 - 4783353
Alignment:
Q  56 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttg 125  Q
    |||||| || ||||||||||||||||||||||||||||| |||||    ||||| ||| |||||||||||    
T  4783422 gtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttg 4783353  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 4815851 - 4815782
Alignment:
Q  56 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttg 125  Q
    |||||| || ||||||||||||||||||||||||||||| |||||    ||||| ||| |||||||||||    
T  4815851 gtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttg 4815782  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 4673224 - 4673288
Alignment:
Q  69 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgt 133  Q
    ||||||||| ||||||||||||||||||| ||    ||||| || ||| ||||||||||||||||    
T  4673224 ggaatgaaatttatgtttagcttctcattgggcttgatttggatacaaaattctttggtgattgt 4673288  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 18925319 - 18925174
Alignment:
Q  69 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaa 168  Q
    |||||||||||||| |||| ||||||| ||||    ||||  | ||| || ||||| |||||||||||| ||||||||  ||||||||| | ||| ||||    
T  18925319 ggaatgaaagttatatttaacttctcagttggtttcattttgaggcagtactctttcgtgattgtcttgttatcgttttgaagccaaagtgcggggttaa 18925220  T
Q  169 agtctttgagaagggtaaggttggttcctactttgactgtgaagag 214  Q
    |||| ||||||||||| |  |||||||| |||||||| ||||||||    
T  18925219 agtcattgagaagggtgacattggttccaactttgacggtgaagag 18925174  T

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