View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5861-21 (Length: 123)
Name: Solexa-NF5861-21
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-21 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 112; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 4e-57
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 5046077 - 5045958
Alignment:
| Q |
4 |
agactcatgggaagattcggaagagtttagaccttcgcggtttttaaattcaagtgtaccagactttaaagaaagtcattttgagtttattccattcgga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5046077 |
agactcatgggaagattcggaagagtttagaccttcgcggtttttaaattcaagtgtaccagactttaaagaaagtcattttgagtttattccattcggg |
5045978 |
T |
|
| Q |
104 |
tcaggtcgaaggtcttgcct |
123 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
5045977 |
taaggtcgaaggtcttgcct |
5045958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 32313198 - 32313082
Alignment:
| Q |
4 |
agactcatgggaagattcggaagagtttagaccttcgcggtttttaaattcaagtgtaccagactttaaagaaagtcattttgagtttattccattcgga |
103 |
Q |
| |
|
|||||| ||||||||| | ||||||||||| |||||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32313198 |
agactcgtgggaagatccagaagagtttaggccttcgcggtttttggattcaagtgcaccagattttaaaggaagtcattttgagtttattccattcggg |
32313099 |
T |
|
| Q |
104 |
tcaggtcgaaggtcttg |
120 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
32313098 |
tctggtcgaaggtcttg |
32313082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University