View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5861-26 (Length: 92)
Name: Solexa-NF5861-26
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 34177841 - 34177750
Alignment:
| Q |
1 |
caaaggaaaacaaaggaaaagcattcagtctatacccaggatagtaaacagactctgccaccaatcatggtaattgagaggaagattgacta |
92 |
Q |
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| T |
34177841 |
caaaggaaaacaaaggaaaagcattcagcctatatccaggatagtaaacggactctgccaccaaccatcgtaattgagaggaagattgacta |
34177750 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 48341234 - 48341282
Alignment:
| Q |
41 |
atagtaaacagactctgccaccaatcatggtaattgagaggaagattga |
89 |
Q |
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| T |
48341234 |
atagtaaacagactctgccaccaaccatgataattgagaggaagattga |
48341282 |
T |
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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 5761099 - 5761048
Alignment:
| Q |
30 |
ctatacccaggatagtaaacagactctgccaccaatcatggtaattgagagg |
81 |
Q |
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| T |
5761099 |
ctatacccagtatggtaaacagactcagccatcaaccatgataattgagagg |
5761048 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 1767174 - 1767122
Alignment:
| Q |
38 |
aggatagtaaacagactctgccaccaatcatggtaattgagaggaagattgac |
90 |
Q |
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| T |
1767174 |
aggatagtaaacggactttgccaccaaccatggtaattgagaggaagactgac |
1767122 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 43026320 - 43026367
Alignment:
| Q |
40 |
gatagtaaacagactctgccaccaatcatggtaattgagaggaagatt |
87 |
Q |
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| T |
43026320 |
gatagtaaacagactgtgccaccacccatggtaattgagaggaagatt |
43026367 |
T |
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Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 18690431 - 18690380
Alignment:
| Q |
30 |
ctatacccaggatagtaaacagactctgccaccaatcatggtaattgagagg |
81 |
Q |
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| T |
18690431 |
ctatacccagtatggtaaacagactcagccatcaaccatgataattgagagg |
18690380 |
T |
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