View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5861-4 (Length: 155)
Name: Solexa-NF5861-4
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-4 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 32804059 - 32804213
Alignment:
| Q |
1 |
gagaagaagatcgagtgatggttgaccagatttcttgaacgctgaatcggagggagcgaagatggtggtggaaggtgagtgttcaagaagactttcggcg |
100 |
Q |
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| T |
32804059 |
gagaagaagatcgagtgatggttgaccagatttcttgaacgctgaatcggagggagcgaagatggtggcggaaggtgagtgttcaagaagactttcggcg |
32804158 |
T |
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| Q |
101 |
atttcgagagttagggacatagagtcgaagcctgcatagtagagaatgtcggcgg |
155 |
Q |
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| T |
32804159 |
agttcgagagttagggacatagagtcgaagcctgaatagtagagaatgtcggcgg |
32804213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 49028875 - 49029030
Alignment:
| Q |
3 |
gaagaagatcgagtgatggttgaccagatttcttgaacgctgaatcggagggagcgaagatggtggtggaaggtgagtgttcaagaagactttcgg---c |
99 |
Q |
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| T |
49028875 |
gaagaagatcgagtgaaggttgaccggatttcttgaacgcggaatcggagggagcaaagacggtggcggagtgtgactgttccagaagagattcggcgac |
49028974 |
T |
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| Q |
100 |
gatttcgagagttagggacatagagtcgaagcctgcatagtagagaatgtcggcgg |
155 |
Q |
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| T |
49028975 |
gatttcgagagttagggacatggagacgaagcctgaatcgaggagaatgtctgcgg |
49029030 |
T |
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