View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5861-5 (Length: 152)
Name: Solexa-NF5861-5
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 140; Significance: 1e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 5045876 - 5045725
Alignment:
| Q |
1 |
gatgaaaatgctagtgagatagatactagtgatgtttttggactcactactttgagaacaagtcgactctttgcagttccaattaattccctctctaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
5045876 |
gatgaaaatgctagtgagatagatactagtgatgtttttggactcactactttgagaacaagtcgactcattgctgttccagttaattccctctctaaag |
5045777 |
T |
|
| Q |
101 |
caacaaaactaaatttgaaaaagtccaaaatactcttagcttcaacaagaaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5045776 |
caacaaaactaaatttgaaaaagtccaaaatactcttagcttcaacaagaaa |
5045725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 32312990 - 32312839
Alignment:
| Q |
10 |
gctagtgagatagatactagtgatgtttttggactcactactttgagaacaagtcgactctttgcagttccaattaa----------ttccctctctaaa |
99 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||| || | || ||||||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
32312990 |
gctagtgagatggatacgagtgatgtttttggactcactgctccgcgagcaagtcgactcattgcagttccagctaagcgtgttgtgtgccctctctaaa |
32312891 |
T |
|
| Q |
100 |
gcaacaaaactaaatttgaaaaagtccaaaatactcttagcttcaacaagaaa |
152 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
32312890 |
tcaacaaaactaaatttggtaaagtccaaaatact-ttagtttcaacaagaaa |
32312839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University