View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5861-7 (Length: 149)
Name: Solexa-NF5861-7
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-7 |
 | |
|
| [»] chr7 (8 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 1e-70; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 4630835 - 4630973
Alignment:
| Q |
11 |
cataggcacaacataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagctatgaaaatc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4630835 |
cataagcacaacataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagctatgaaaatc |
4630934 |
T |
|
| Q |
111 |
tgaaagactctatcaccttgatctcttatcgtcatttca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4630935 |
tgaaagactctatcaccttgatctcttatcgtcatttca |
4630973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 4672595 - 4672701
Alignment:
| Q |
22 |
cataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagctatgaaaatctgaaagactct |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| |||||||||| |||||||||||| |||| |
|
|
| T |
4672595 |
cataatccttatgaacaggaaccatacgagcaccactccaacttataacatcagctctttcctcagccagagtgttagctataaaaatctgaaaggctct |
4672694 |
T |
|
| Q |
122 |
atcacct |
128 |
Q |
| |
|
||||||| |
|
|
| T |
4672695 |
atcacct |
4672701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 4636772 - 4636883
Alignment:
| Q |
18 |
acaacataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagctatgaaaatctgaaaga |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || ||||| ||| | | | ||||| ||||||| |||||||||| |
|
|
| T |
4636772 |
acaacataatccttatgaacaggaaccatacgagcaccactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaaga |
4636871 |
T |
|
| Q |
118 |
ctctatcacctt |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4636872 |
ctctatcacctt |
4636883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 4863842 - 4863948
Alignment:
| Q |
23 |
ataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagctatgaaaatctgaaagactcta |
122 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||||| |||||||||||| ||||||||||| | | | ||| ||||||||||||||||| ||||| |
|
|
| T |
4863842 |
ataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctcta |
4863941 |
T |
|
| Q |
123 |
tcacctt |
129 |
Q |
| |
|
||||||| |
|
|
| T |
4863942 |
tcacctt |
4863948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 4643590 - 4643697
Alignment:
| Q |
22 |
cataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagctatgaaaatctgaaagactct |
121 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| ||||||||| || ||||| ||| | | | ||||| ||||||| |||||||||||||| |
|
|
| T |
4643590 |
cataatccttatgaacaggaaccaaacgagcaccactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactct |
4643689 |
T |
|
| Q |
122 |
atcacctt |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
4643690 |
atcacctt |
4643697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 4662899 - 4663017
Alignment:
| Q |
11 |
cataggcacaacataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagctatgaaaatc |
110 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||||| || |||||||||||||||||| ||| ||| ||| ||| | | | | |||| |||||| |
|
|
| T |
4662899 |
catagtcacaccataatccttatgaacaggaaccatacgaccattactccaccttatcacatcggctaattcttcaactaaattatcatctataaaaatc |
4662998 |
T |
|
| Q |
111 |
tgaaagactctatcacctt |
129 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
4662999 |
tgaaacattctatcacctt |
4663017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 4784011 - 4783957
Alignment:
| Q |
22 |
cataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagc |
76 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
4784011 |
cataatccttatgaacaggaaccaaaggagcaccactccaccttatcacatcagc |
4783957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 4816440 - 4816386
Alignment:
| Q |
22 |
cataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagc |
76 |
Q |
| |
|
|||||||||||||| |||||| | | ||||||||||||||| |||||||||||| |
|
|
| T |
4816440 |
cataatccttatgaacaggaacaaaaggagcaccactccaccatatcacatcagc |
4816386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 18925929 - 18925808
Alignment:
| Q |
11 |
cataggcacaacataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagctttttcctcagctagaatgttagctatgaaaatc |
110 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||||| | | | | | |||| |||||| |
|
|
| T |
18925929 |
catagtcacaacataatccttatgaacaggaaccatacgagcaccactccaatgaatcacatcagcatttcgttcagccaaattatcatctataaaaatc |
18925830 |
T |
|
| Q |
111 |
tgaaagactctatcaccttgat |
132 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
18925829 |
tgaaaaactctatcaccttgat |
18925808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University