View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5861-8 (Length: 273)
Name: Solexa-NF5861-8
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5861-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 49 - 273
Target Start/End: Original strand, 38051222 - 38051452
Alignment:
| Q |
49 |
gattcgatgaactttgtagtttttcaaagatggagacaaatacgtgttaagtgaagaaaaagaggaagaaaagggggtatg------aatatgaagtatr |
142 |
Q |
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| T |
38051222 |
gattcgatgaactttgtagtttttcaaagatggagacaaatacgtgttaagtgaagaaaaagaggaagaaaagggggtatgaatatgaatatgaagtata |
38051321 |
T |
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| Q |
143 |
aggtgtaaaagttcaacgaacctgatttggaattgctttgtgttttcgctgcgttatgaccaggacgccaccacacagtggcttaaagtcttaaaacaaa |
242 |
Q |
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| T |
38051322 |
aggtgtaaaagttcaacgaacctgatttggaattgctttgtgttttcgctgcgttatgaccaggacgccaccacacagtggcttaaagtcttaaaacaaa |
38051421 |
T |
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| Q |
243 |
ctcaatattttcttctccttcttcttctctc |
273 |
Q |
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| T |
38051422 |
ctcaatattttcttctcctacttcttctctc |
38051452 |
T |
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