View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5861-9 (Length: 147)

Name: Solexa-NF5861-9
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5861-9
Solexa-NF5861-9
[»] chr4 (2 HSPs)
chr4 (6-141)||(4075247-4075382)
chr4 (19-68)||(5232904-5232953)
[»] chr7 (2 HSPs)
chr7 (6-129)||(25824790-25824913)
chr7 (6-54)||(37804102-37804150)
[»] chr1 (2 HSPs)
chr1 (16-63)||(19411833-19411880)
chr1 (16-63)||(50750156-50750203)
[»] chr2 (2 HSPs)
chr2 (6-51)||(7821871-7821916)
chr2 (6-54)||(7812337-7812385)
[»] chr5 (3 HSPs)
chr5 (19-63)||(15113355-15113399)
chr5 (19-54)||(29362350-29362385)
chr5 (19-54)||(30270365-30270400)
[»] chr3 (1 HSPs)
chr3 (17-65)||(25962716-25962764)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 4075247 - 4075382
Alignment:
Q  6 cataaagaagctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttaaagg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4075247 cataaagaagctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttagagg 4075346  T
Q  106 ctcccattgcttcctatagatagatggatggccttc 141  Q
    |||||||||||||||||||||||||||||| |||||    
T  4075347 ctcccattgcttcctatagatagatggatgaccttc 4075382  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 5232953 - 5232904
Alignment:
Q  19 attccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcat 68  Q
    ||||||||||||||| |||||||| | |||||||||||| ||||| ||||    
T  5232953 attccaagtatcaggaacaccaggcaaacaccaatgtatacaatcagcat 5232904  T

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Target: chr7 (Bit Score: 48; Significance: 9e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 25824913 - 25824790
Alignment:
Q  6 cataaagaagctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttaaagg 105  Q
    |||||||||||||||||||   |||||| || || || || ||||||||||||||||||||||||   |||||||||||||| || ||||  |||| |||    
T  25824913 cataaagaagctcattccatacatcaggaactcctggtaggcaccaatgtatgcaatctgcataaccatttggatttgatatctgttcttgagttagagg 25824814  T
Q  106 ctcccattgcttcctatagataga 129  Q
     ||||| || ||||||||||||||    
T  25824813 ttcccactgtttcctatagataga 25824790  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 37804150 - 37804102
Alignment:
Q  6 cataaagaagctcattccaagtatcaggcacaccagggagacaccaatg 54  Q
    ||||||||| ||||||||| | ||| || ||||||||||||||||||||    
T  37804150 cataaagaatctcattccacgaatcgggaacaccagggagacaccaatg 37804102  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 19411833 - 19411880
Alignment:
Q  16 ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc 63  Q
    |||||||||| ||||||||||||||||||| ||||||||  |||||||    
T  19411833 ctcattccaaatatcaggcacaccagggaggcaccaatgactgcaatc 19411880  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 50750156 - 50750203
Alignment:
Q  16 ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc 63  Q
    |||||||||| ||||||||||||||||||| ||||||||  |||||||    
T  50750156 ctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc 50750203  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 7821916 - 7821871
Alignment:
Q  6 cataaagaagctcattccaagtatcaggcacaccagggagacacca 51  Q
    ||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  7821916 cataaagtagctcattccatgtatcaggtacaccaggaagacacca 7821871  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 7812385 - 7812337
Alignment:
Q  6 cataaagaagctcattccaagtatcaggcacaccagggagacaccaatg 54  Q
    ||||||| ||||||||||| |||||||| ||||| || |||||||||||    
T  7812385 cataaagtagctcattccatgtatcaggtacaccgggaagacaccaatg 7812337  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 15113399 - 15113355
Alignment:
Q  19 attccaagtatcaggcacaccagggagacaccaatgtatgcaatc 63  Q
    ||||||||||||||| |||||||| |||||||||||  |||||||    
T  15113399 attccaagtatcaggaacaccaggcagacaccaatggctgcaatc 15113355  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 29362350 - 29362385
Alignment:
Q  19 attccaagtatcaggcacaccagggagacaccaatg 54  Q
    ||||||||||||||||| |||||| |||||||||||    
T  29362350 attccaagtatcaggcaaaccaggaagacaccaatg 29362385  T

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Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 30270400 - 30270365
Alignment:
Q  19 attccaagtatcaggcacaccagggagacaccaatg 54  Q
    ||||||||||||||||| |||||| |||||||||||    
T  30270400 attccaagtatcaggcaaaccaggaagacaccaatg 30270365  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 25962764 - 25962716
Alignment:
Q  17 tcattccaagtatcaggcacaccagggagacaccaatgtatgcaatctg 65  Q
    ||||||||||||||||| | |||||| |||||||||||  |||||||||    
T  25962764 tcattccaagtatcaggtaaaccaggaagacaccaatgactgcaatctg 25962716  T

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